Pairwise Alignments

Query, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  178 bits (451), Expect = 3e-49
 Identities = 135/420 (32%), Positives = 195/420 (46%), Gaps = 26/420 (6%)

Query: 49  GQSLSGSTRNWYARERAARAPLWK-----YYKNDGTRHDTHS----RENWVQGTILNYSS 99
           G++L  +   W A   A  AP W      Y+ +   R  + S    R+ W QG I    S
Sbjct: 9   GRALLATLALWPALSHA-EAPGWSLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRS 67

Query: 100 GFTQGTVGFAVEAAGYNAIALQQSREAIAGPNNRTLT--HSDGDPVGQWSKLGLGNIKAR 157
           GFT+GTVG  ++A G+  + L   R    G +   L    SDG    ++S  G   +K +
Sbjct: 68  GFTEGTVGVGIDAHGFLGLKLDGGR----GHSGTGLLPRDSDGRAESEYSSAGAA-LKMQ 122

Query: 158 VSNTTLTLGRQSVDTPMIAYIGNRALPSSFQGAFLHSAEFDNLSIDLGTFDRVSPRTEQS 217
           + NT L  G   V+TP+      R  P    G ++ + +  +  +  G F   + +   S
Sbjct: 123 LGNTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSS 182

Query: 218 LSKFRSEYSATGVETDRASTAGINYQPFKSLSTSLYATKVEDFWNQYYFGANHVLGDSAV 277
                S Y AT       S AG  + P      +LYA ++E+ W Q Y   N   G+  +
Sbjct: 183 THDDFSGYGAT-THNRAISLAGATFAPNGPFGAALYAGQLENTWRQAYLNLNLAQGNWRL 241

Query: 278 LSLSTGLNYYKTVDAGSQKMGKIDNDTYSLSLGLTHQAHTLSASWQQVNGNEYFDYLHET 337
                  N YKT D G+   G ID   YSL    +  A  LS ++Q+V G+  FD++   
Sbjct: 242 DG-----NLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGG- 295

Query: 338 NGIFLANSL-LSDFNGPNEKSLQLSYVLNMAPYGVPGLKFNLYNARGWGIDGTHY-RGTA 395
           + I+LAN++  +DFNGP E S QL Y LN A  G PGL        G GIDG+H   G A
Sbjct: 296 DSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGA 355

Query: 396 YDVNGLDGETHYEWGIGTSYALQSGPLKDTSIRATYTTHRASKAQGDGSLDEFRVVTTIP 455
           Y     DG  H+E  I   Y +QSG  KD S+  ++ +HRA++AQ    +D   ++   P
Sbjct: 356 YVNQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEYP 415