Pairwise Alignments

Query, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  216 bits (550), Expect = 1e-60
 Identities = 138/423 (32%), Positives = 209/423 (49%), Gaps = 13/423 (3%)

Query: 45  GFIDGQSLSGSTRNWYARERAARAPLWKYYKNDGTRHDTHSRENWVQGTILNYSSGFTQG 104
           GFIDG  +    RN++  +       +    N+G R   H    W  G I N  SGFT+G
Sbjct: 29  GFIDGTRVHVLNRNFFFSQDYRNGD-FTLNPNNGERQSLH--REWGHGIIANLQSGFTRG 85

Query: 105 TVGFAVEAAGYNAIALQQSREAIA------GPNNRTLTHSDGDPVGQWSKLGLGNIKARV 158
           TVGF V+  G   + L     A+       G  +R+ ++ DG+P   + K+G   +K R 
Sbjct: 86  TVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEPKDSYGKVGTA-LKVRA 144

Query: 159 SNTTLTLGRQSVDTPMIAYIGNRALPSSFQGAFLHSAEFDNLSIDLGTFDRVSPRTEQS- 217
            +T L  G  S  +P++     R LP + +G   ++   D LS+  G  +  S R   + 
Sbjct: 145 FDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQGGKLESSSDRNASNH 204

Query: 218 LSKFRSEYSATGVETDRASTAGINYQPFKSLSTSLYATKVEDFWNQYYFGANHVLGDSAV 277
                + Y+      +     G +Y+    L+  L++++++D WNQ +F  +HV    + 
Sbjct: 205 RGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLDDVWNQSFFSVDHVQPLGSE 264

Query: 278 LSLSTGLNYYKTVDAGSQKMGKIDNDTYSLSLGLTHQAHTLSASWQQVNGNEYFDYLHET 337
           LSL TGLNYY+T D+G    G+IDND++S+  GL   AH    S+ +++G+  FDY+  T
Sbjct: 265 LSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGFKLSYTRIDGDTPFDYVWNT 324

Query: 338 NGIFL-ANSLLSDFNGPNEKSLQLSYVLNMAPYGVPGLKFNLYNARGWGIDGTHYRGTAY 396
             + L A S +SDFN PNE++ +  Y  + AP GVPGL       RG  IDGT   G   
Sbjct: 325 YDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSLTARYVRGTDIDGTRAGGAYS 384

Query: 397 DVNGLDGETHYEWGIGTSYALQSGPLKDTSIRATYTTHRASKAQ-GDGSLDEFRVVTTIP 455
             NG +   H+E  +   Y LQSGP KD S      THR       + ++DE R++   P
Sbjct: 385 YFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHRVGGDHVAESNVDELRLIVQYP 444

Query: 456 FNI 458
            +I
Sbjct: 445 LDI 447