Pairwise Alignments

Query, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  189 bits (480), Expect = 1e-52
 Identities = 153/468 (32%), Positives = 218/468 (46%), Gaps = 56/468 (11%)

Query: 1   MKVFTLTALALSISAFSTVAQADPQSQDYLPLTLKSSSEQAQASGFIDGQSLSGSTRNWY 60
           M+V   + +AL++SA ++               L  +S Q ++ GFI+   LS  TR  Y
Sbjct: 1   MRVMKWSMIALAVSAGTS--------------QLAMASAQDESKGFIEDSKLSVKTRMLY 46

Query: 61  ARERAARAPLWKYYKNDGTRHDTHSRENWVQGTILNYSSGFTQGTVGFAVEAAGYNAIAL 120
                       +  N+G +     RE    G +  + SGFTQGTVG  V+A G   + L
Sbjct: 47  FSR--------DFRNNEGGQS---RREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKL 95

Query: 121 QQSREAIAGPNNRTLTHSDGDPVGQWSKLGLGNIKARVSNTTLTLGRQSVDTPMIAYIGN 180
             S +  AG      T SDG     +SK G G +K R+S+T L +G Q    P+ A   +
Sbjct: 96  D-SGKGRAG-TGLFPTGSDGRSQDDYSKGG-GAVKFRISDTVLKVGDQFTALPVFATDDS 152

Query: 181 RALPSSFQGAFLHSAEFDNLSIDLGTFDRVSPRTEQSLSKFRSEYSATGVETDRASTAGI 240
           R LP   QG  + S E + L++  G F  ++ + + +   F  +          A+  G 
Sbjct: 153 RLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDSFGLK---------EANVVGG 203

Query: 241 NYQPFKSLSTSLYATKVEDFWNQYYFGANHVLGDSAVLSLSTGLNYYKTVDAGSQKM--- 297
            Y    +LSTSLY +KVED+W +YY   N  L  S    L    N Y T   GS +    
Sbjct: 204 TYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAF 263

Query: 298 --GKIDNDTYSLSLGLTHQAHTLSASWQQVNGNEYFDYLHETNG-IFLANSLL-SDFNGP 353
              K+DN  +SLS      AHT + ++Q+V G+  + Y  +  G IFLANS+  SDFN  
Sbjct: 264 DGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAE 323

Query: 354 NEKSLQLSYVLNMAPYGVPGLKFNLYNARGWGIDGTHYRGTAYDVNGLDGETHYEWGIGT 413
           +EKS Q  Y LN A YG+PGL F             + RG+  +V G      +E  +  
Sbjct: 324 DEKSWQARYDLNFAEYGIPGLTFMT----------RYVRGSDANVAGTSNGKEWERDVDI 373

Query: 414 SYALQSGPLKDTSIRATYTTHRASKA--QGDGSLDEFRVVTTIPFNIL 459
            Y LQ GP KD S R    T+R+S        S+DE R++   P +IL
Sbjct: 374 KYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421