Pairwise Alignments

Query, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  149 bits (377), Expect = 1e-40
 Identities = 130/450 (28%), Positives = 197/450 (43%), Gaps = 52/450 (11%)

Query: 33  TLKSSSEQAQASGFIDGQSLSGSTRNWYARERAARAPLWKYYKNDGTRHDTHSRENWVQG 92
           T   +++QA + GFI+    +   RN Y               N   +H T  +  W Q 
Sbjct: 17  TQAQANDQADSKGFIEDSHANVLLRNAYI--------------NRDKKHGTDDQIEWGQA 62

Query: 93  TILNYSSGFTQGTVGFAVEAAGYNAIALQQSREAIAG-------PNNRTLTHSDGDPVGQ 145
            I N+SSGFTQGTVG  V+A G  A+ L   +    G       P+  T    +      
Sbjct: 63  FIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHN 122

Query: 146 WSKLGLGNIKARVSNTTLTLGRQSVDTPMIAYIGNRALPSSFQGAFLHSAEFDNLSIDLG 205
            ++ G   +K R+SNT L  G Q    P++ Y   R LP SF G  + S E   L ++ G
Sbjct: 123 LARGGAA-VKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAG 181

Query: 206 TFDRVSPRTEQSLSKFRSEYSATGVETDRASTAGINYQPFKSLSTSLYATKVEDFWNQYY 265
            F        Q   K        G+++   +  G +Y+   + + SLY    ED   ++Y
Sbjct: 182 RF-------TQEARKSAERRDGGGLKS--INVLGGSYKFTDNFTASLYTADNEDVMKKHY 232

Query: 266 FGANHVLGDSAVLSLSTGLNYYKT-VDAGSQKMGKIDNDT---YSLSLGLTHQAHTLSAS 321
            G N+V   ++  SL+   N YK+ ++    K   ++ D+   +SL+    + AH+ + +
Sbjct: 233 LGLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLA 292

Query: 322 WQQVNGNEYFDYLHETNG---------IFLANSLLSDFNGPNEKSLQLSYVLNMAPYGVP 372
            Q+  G+  ++Y    N          I+LANS  SDFN  +E+S QL Y L+   YG+P
Sbjct: 293 HQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAEDERSWQLGYGLDFGAYGIP 352

Query: 373 GLKFNLYNARGWGIDGTHYRGTAYDVNGLDGETHYEWGIGTSYALQSGPLKDTSIRATYT 432
           GL + L    G   D  + R  A +  G       E      Y +Q GP KD SI+   +
Sbjct: 353 GLTYKLAYVVG---DNINTRNVA-NPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSS 408

Query: 433 THRASKA-QGDGSLD---EFRVVTTIPFNI 458
             R + A Q +G  D   E RV    P +I
Sbjct: 409 FLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438