Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  474 bits (1221), Expect = e-138
 Identities = 243/520 (46%), Positives = 330/520 (63%), Gaps = 9/520 (1%)

Query: 20  RLALVALLLGGATQL------AAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLV 73
           R+AL  LLL            AA  LV C+EASP GFD  QYT+    DASAETVFNRL 
Sbjct: 3   RIALKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLT 62

Query: 74  DFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQ 133
            FK G TE++P LA  WDIS DGLTYTFHLR GVKFHTTD+F PTRD NADDVL++ NR 
Sbjct: 63  QFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRL 122

Query: 134 LDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSI 193
           LD   P+        PYF  MG    +KSV K D+HTV   L+  +A F++++AM F S+
Sbjct: 123 LDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASV 182

Query: 194 YSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKP-PADALVF 252
            SAEY  QLLK GK  E+N KP+GTGPF+F+RY KD+Q+R+  N  Y++ +    D LVF
Sbjct: 183 QSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVF 242

Query: 253 AIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYL 312
           AI  D+  RLQKL+A ECQV+ YP+P D+  +KQDP L V +      G++A N  H  L
Sbjct: 243 AITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHPPL 302

Query: 313 NDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALL 372
           + ++VR+A++MA D+   +  ++     L   N  PP    Y+   ++ P D  KA+ALL
Sbjct: 303 DQLKVRQALDMAIDKPAIIKAVYQSAGQL-AQNALPPAQWSYDPTIKDAPYDPTKAKALL 361

Query: 373 SQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKN 432
            +AGV  GT + L+       +NPN R+SA+M+Q D +++G+K +I   EW E ++RAKN
Sbjct: 362 KEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKN 421

Query: 433 GEADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDER 492
           GE D +  GW GDNGDPDN+L  L SC AVK G NYA+WCNP + +L+ +A+   D ++R
Sbjct: 422 GEHDAMIYGWTGDNGDPDNWLGVLYSCAAVK-GSNYAKWCNPAYDKLVQQAKVSNDREQR 480

Query: 493 ARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINP 532
            + Y +A K+  ++ P   +A+  +F  +R  V+ + I+P
Sbjct: 481 IKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISP 520