Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  462 bits (1189), Expect = e-134
 Identities = 233/513 (45%), Positives = 324/513 (63%), Gaps = 11/513 (2%)

Query: 35  AAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVDFKPGTTEIQPALAERWDISA 94
           AA  LV C+E SP GFD  QYTT    DASAET+FNRL  F+ G T + P LA  WD+S 
Sbjct: 24  AATNLVFCSEGSPAGFDPGQYTTGTDFDASAETMFNRLTQFERGGTAVIPGLATSWDVSP 83

Query: 95  DGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQLDPNHPWHDKTSVGYPYFESM 154
           DGLTYTFHLR GVKFHTT YFKPTR  NADDVL++ NR ++ + P+       +PYF  M
Sbjct: 84  DGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVLFTFNRMINKDDPFRKAYPTEFPYFTDM 143

Query: 155 GFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSAEYGDQLLKSGKTAELNSK 214
           G    +K++ K DEHTV  TL   +A F++++AM F SI SAEY  QLLK GK A++N K
Sbjct: 144 GMDTNIKNIEKVDEHTVKFTLGTVDAAFIQNLAMSFASIQSAEYAAQLLKEGKPADINQK 203

Query: 215 PIGTGPFIFQRYNKDAQVRFKPNPDYFRGKP-PADALVFAIAIDSNVRLQKLRANECQVA 273
           PIGTGPF+F+ Y KD+ +R+  N DY++ +    D L+FAI  D +VR+QKL+ NECQ+ 
Sbjct: 204 PIGTGPFVFKSYQKDSNIRYTGNKDYWKPEDVKIDNLIFAITTDPSVRIQKLKKNECQIT 263

Query: 274 LYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKY--------LNDVRVRKAINMAF 325
           L+P+P D+ ++  D  LK+        GYIA N   K         L D+RVR+A++M+ 
Sbjct: 264 LFPRPADLKALGDDKDLKLPHQAGFNLGYIAYNVMDKVKGSDQPNPLADLRVRQALDMSV 323

Query: 326 DRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQAGVPEGTVITL 385
           ++Q  +D ++ +G   + VN  PPT   Y+T  ++   D +KA++LL +AG+ EGT I L
Sbjct: 324 NKQQIIDSVY-QGAGQLAVNAMPPTQWSYDTTIKDAKYDPEKAKSLLKEAGIKEGTEIVL 382

Query: 386 FTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGEADLVSTGWAGD 445
           +      P NPN +L AEMLQ D K+IGL + I   EW E ++R+K GE   +  GW+GD
Sbjct: 383 WAMPVQRPYNPNAKLMAEMLQNDWKKIGLNVKITSYEWGEYIKRSKGGENQAMIIGWSGD 442

Query: 446 NGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDERARLYNEALKVYDD 505
           NGDPDN+L+ L  CD++ SG N+++WC+ KF  ++  A+   D  +R  LY +A  +  D
Sbjct: 443 NGDPDNWLNVLFGCDSL-SGNNFSKWCDKKFDGIVKEAKATSDVAKRTELYKQAQHILKD 501

Query: 506 EQPWISMAHPKMFTAMRDNVEGYVINPLTNNNF 538
             P   +AH  ++  MR  V+ + I+P   N+F
Sbjct: 502 AVPMTPIAHSTVYQPMRSTVQDFKISPFGLNSF 534