Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 530 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  523 bits (1348), Expect = e-153
 Identities = 259/530 (48%), Positives = 353/530 (66%), Gaps = 5/530 (0%)

Query: 19  LRLALVALLLG----GATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVD 74
           +RLA + LLL          AA  L VCTEASPEGFD+VQY +  T +ASA+ + NRLVD
Sbjct: 1   MRLAALPLLLAPLFIAPLASAASNLSVCTEASPEGFDVVQYNSLTTTNASADVLMNRLVD 60

Query: 75  FKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQL 134
           +   + ++ P+LA+ W++S DGLTYTF L   VKFH T+YF P+R L A+DV +S  R L
Sbjct: 61  YDAASGKLVPSLADSWEVSPDGLTYTFKLHPDVKFHRTEYFTPSRTLTAEDVRFSFERML 120

Query: 135 DPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIY 194
           DP +PWH     G+P+ +S+    L+K +   D  TV  TL   ++ FL  ++MGF SIY
Sbjct: 121 DPANPWHKIAQSGFPHAQSLQLPTLVKKIDALDPLTVRFTLDHADSTFLAALSMGFASIY 180

Query: 195 SAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVFAI 254
            AEY ++LLK+G   +LNS+PIGTGPFIF R+ KDA VR+K NP+YF GKPP D L+FAI
Sbjct: 181 PAEYAEKLLKAGTPEKLNSQPIGTGPFIFSRFQKDAVVRYKANPNYFAGKPPVDNLIFAI 240

Query: 255 AIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYLND 314
             D+NVRLQKL  +ECQ+AL PKP DV   ++DP LKVE+  A +T ++A+N+QH  L+ 
Sbjct: 241 TPDANVRLQKLHRDECQIALSPKPLDVGEAEKDPALKVEKTAAFMTAFLAINSQHPPLDK 300

Query: 315 VRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQ 374
             VR+AIN+AFD+ +++  +F +G A     PYPP    Y       P+DL KA+ALL +
Sbjct: 301 PEVRQAINLAFDKGSYLKAVF-EGTAEAANGPYPPNTWSYAKDLPGYPQDLAKAKALLDR 359

Query: 375 AGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGE 434
           AG+ +G   T++TR  G   NPNP L A++LQADL ++G++ +IRV+EW E++RRAK GE
Sbjct: 360 AGLKDGFKTTIWTRPTGSLLNPNPNLGAQLLQADLAKVGIQAEIRVIEWGELIRRAKAGE 419

Query: 435 ADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDERAR 494
            DL+  GWAGDNGDPDNFL+P  SC AVKSG N+AR+C+P   +LIS  +   +   R++
Sbjct: 420 HDLLFMGWAGDNGDPDNFLTPQFSCAAVKSGTNFARYCDPALDKLISAGKTTSEQGVRSK 479

Query: 495 LYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNFATTKVK 544
           LY +A      +  W+ +AHP  F   R NVEGY ++P    +F+   VK
Sbjct: 480 LYQQAQAQIQQQALWLPLAHPTAFALARKNVEGYQVSPFGRQDFSKVSVK 529