Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  425 bits (1093), Expect = e-123
 Identities = 222/530 (41%), Positives = 323/530 (60%), Gaps = 8/530 (1%)

Query: 18  PLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVDFKP 77
           P  +A + L  G    ++AK LV C+E SPE F     TT  + D + + V+N +V+F+ 
Sbjct: 19  PTAIAALTLACGA---VSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQ-VYNTIVEFER 74

Query: 78  GTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDY-FKPTRDLNADDVLWSLNRQLDP 136
           G T++ P LAE+WDISADG  YTFHLR+GVK+HTT   FKPTRD NADD ++ L RQ   
Sbjct: 75  GGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKE 134

Query: 137 NHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSA 196
           + P+   TS  + YF  MG  +LLK+V + D++TV I L++PEAPFL ++AM +  I S 
Sbjct: 135 SDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSK 194

Query: 197 EYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVFAIAI 256
           EY   +LK+G   +++  PIGTGPF   +Y KDA +RFK  P Y+ GK   D LVFAI  
Sbjct: 195 EYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGKAKIDDLVFAITP 254

Query: 257 DSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYLNDVR 316
           D++VR  KL+  EC V  YP P D+ +I++DP ++V E   L  GY++ NT  K  +DVR
Sbjct: 255 DASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDDVR 314

Query: 317 VRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQAG 376
           VRKAINMA +++  +D ++     +   NP PPTM  YN   ++ P D + A+ LL+QAG
Sbjct: 315 VRKAINMAINKKAIIDGVY-LTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQAG 373

Query: 377 VPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGEAD 436
            P+G    L+      P NPN +  AE++QADL +I +K +I+  EW E  +R + GE  
Sbjct: 374 YPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEHQ 433

Query: 437 LVSTGWAGDNGDPDNFLSPLLSCDAVK--SGENYARWCNPKFQELISRAREVIDNDERAR 494
           +   GW GDNGDPDNFL  LL C + K  SG N +++C   +++L+ +A+  +   +R  
Sbjct: 434 MGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRDA 493

Query: 495 LYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNFATTKVK 544
           LY +A  ++ ++ PW ++AH      +R  V  + ++P   + F    +K
Sbjct: 494 LYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDIK 543