Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  472 bits (1214), Expect = e-137
 Identities = 238/522 (45%), Positives = 334/522 (63%), Gaps = 11/522 (2%)

Query: 26  LLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVDFKPGTTEIQPA 85
           LL G  + +AA  LV C+E SP GFD  QYTT    DASAETVFNRL  F+ G T + P 
Sbjct: 15  LLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTAVIPG 74

Query: 86  LAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQLDPNHPWHDKTS 145
           LA +W++S DG TYTFHLR+GVKFHTTDYFKP+R  NADDVL++ NR LD ++P+     
Sbjct: 75  LATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKAYP 134

Query: 146 VGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSAEYGDQLLKS 205
             +PYF  MG  + +  V K DEHTV  TL+  +A F++++AM F SI SAEY DQLLK+
Sbjct: 135 TEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYADQLLKN 194

Query: 206 GKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKP-PADALVFAIAIDSNVRLQK 264
           GK A++N KPIGTGPF+F +Y KDAQ+RFK N DY++ +    D L+FAI  D++VR+QK
Sbjct: 195 GKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRMQK 254

Query: 265 LRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKY--------LNDVR 316
           L+ NECQV L+P+P D+  +K D  L++ +      GYIA N   K         +  ++
Sbjct: 255 LKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQLK 314

Query: 317 VRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQAG 376
           VR+A++MA D++  ++ ++ +G   + VN  PPT   Y+   ++   D +KA+ LL +AG
Sbjct: 315 VRQALDMAVDKKKIIESVY-QGAGQLAVNAMPPTQWSYDDSIKDAAFDPEKAKQLLKEAG 373

Query: 377 VPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGEAD 436
           + EGT ITL+      P NPN +L AEMLQ+D  +IG+K  I   EW E ++R+K GE  
Sbjct: 374 IKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGGEQG 433

Query: 437 LVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDERARLY 496
            +  GW+GDNGDPDN+L  L  CDAV  G N+++WC   + +LI +A+   D  +R  LY
Sbjct: 434 AMLIGWSGDNGDPDNWLGTLYGCDAV-DGNNFSKWCYKPYDDLIKQAKATSDQAKRTELY 492

Query: 497 NEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNF 538
            +A  +  ++ P   +AH  ++  M   V+ + I+P   N+F
Sbjct: 493 QKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSF 534