Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 512 a.a., predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  162 bits (409), Expect = 4e-44
 Identities = 147/537 (27%), Positives = 248/537 (46%), Gaps = 38/537 (7%)

Query: 9   MHRAFMKSRPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETV 68
           M RA  +S  + L +   L+      AAK +VV   ++    D       ++  A A++ 
Sbjct: 1   MARAVHRSGLVALGIATALMASCA-FAAKDVVVAVGSNFTTLDPYDANDTLS-QAVAKSF 58

Query: 69  FNRLVDFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLW 128
           +  L        +++  LAE + +S DG+TYT  LR+G+KF      +   D NA  V  
Sbjct: 59  YQGLFGLDK-EMKLKNVLAESYTVSDDGITYTVKLREGIKF------QDGTDFNAAAVKA 111

Query: 129 SLNRQLDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAM 188
           +L+R  DP +  H K    Y  ++++   E +      D  TV ITL +P + F+  +A 
Sbjct: 112 NLDRASDPAN--HLKR---YNLYKNIAKTEAI------DPTTVKITLKQPFSAFINILAH 160

Query: 189 GFTSIYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFR-GKPPA 247
             T++ S      L K GK  E+   P+GTGP+    +N+   V+ K    Y++ G P  
Sbjct: 161 PATAMISPA---ALEKYGK--EIGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKL 215

Query: 248 DALVFAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNT 307
           D++ +    D+N R   L+  E Q A     +    ++++  +++    +++  YI+MN 
Sbjct: 216 DSITWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNV 275

Query: 308 QHKYLNDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDK 367
             K  ++ +VR+A+N A +R   V   F  G A       PP+ I Y    +  P D  K
Sbjct: 276 TQKPFDNPKVREALNYAINRPALVKVAFA-GYATPATGVVPPS-IAYAQSYKPWPYDPVK 333

Query: 368 ARALLSQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEML 427
           AR LL +AG P G   TL++ +     +   +   +  Q  L Q+G+K  +  M+  +  
Sbjct: 334 ARELLKEAGYPNGFSTTLWSSH----NHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRA 389

Query: 428 -----RRAKNGEADLVSTGWAGDNGDPDNFLSPLL-SCDAVKSGENYARWCNPKFQELIS 481
                +  K     +  TGW+   G+ D  LSPL  S +   +  N A + N +  + ++
Sbjct: 390 AEVEGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLA 449

Query: 482 RAREVIDNDERARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNF 538
           +A +  D  E+ RLY  A  +   E PWI +   K+ +A   N+ G+ I P T  +F
Sbjct: 450 QALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSF 506