Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 534 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  457 bits (1175), Expect = e-133
 Identities = 235/522 (45%), Positives = 324/522 (62%), Gaps = 5/522 (0%)

Query: 25  ALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVDFKPGTTEIQP 84
           AL +  A    AK  V C+EASPEGFD   YT   T DASA  V+NRL +FK GTTE++P
Sbjct: 13  ALAMASAMPAMAKTFVYCSEASPEGFDPSPYTAGGTFDASAHPVYNRLTEFKKGTTEVEP 72

Query: 85  ALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQLDPNHPWHDKT 144
            LAE+WD+S+DGL YTFHLR+GVKFH+ D F P+RD NADDV++S NRQ D  +PW+   
Sbjct: 73  GLAEKWDVSSDGLEYTFHLRKGVKFHSNDKFTPSRDFNADDVIFSYNRQGDTKNPWNQYI 132

Query: 145 S-VGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSAEYGDQLL 203
           + + Y Y+ SM    L+K + K D++TV   L+RPEAPFL ++AM F SI S EY D L 
Sbjct: 133 AGITYEYYNSMEMPSLIKEIVKVDDYTVKFVLTRPEAPFLANIAMPFASIVSKEYADTLE 192

Query: 204 KSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVFAIAIDSNVRLQ 263
           K+G   + N+ PIGTGPF F  Y KDA +R++ N DY+   P  D L+FAI  D+ VRLQ
Sbjct: 193 KAGTKEDFNNLPIGTGPFKFVAYQKDAVIRYQKNADYWGDAPKIDDLIFAITPDAAVRLQ 252

Query: 264 KLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYLNDVRVRKAINM 323
           KL+A EC +  YP P D+ +I+ D  LK++E   L   Y A NT     +   VRKA+NM
Sbjct: 253 KLKAGECHLMPYPAPADLSTIRADKNLKLDEQPGLNVAYFAYNTTVAPFDKPEVRKALNM 312

Query: 324 AFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQAGVPEGTVI 383
           A ++Q  +D +F +G   V  NP PPTM  YN   ++   D + A+  L  AGV + T +
Sbjct: 313 AMNKQAIIDAVF-QGAGTVAKNPIPPTMWSYNDSIKDDAYDPEAAKKALEAAGVKDLT-M 370

Query: 384 TLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGEAD-LVSTGW 442
            ++      P  PN R +AE++Q+D  ++G+K +I   EW E L+++     D  V  GW
Sbjct: 371 KIWAMPVQRPYMPNARRTAELIQSDFAKVGVKAEIVSFEWGEYLKKSTEVNRDGAVILGW 430

Query: 443 AGDNGDPDNFLSPLLSCDAV-KSGENYARWCNPKFQELISRAREVIDNDERARLYNEALK 501
            GDNGDPDNF+  LLSC A  + G N A+WCN +F EL+S+A++  D  ER +LY +A  
Sbjct: 431 TGDNGDPDNFMGVLLSCAATGEGGANRAQWCNKEFSELLSKAKQTTDVAERTKLYEQAQV 490

Query: 502 VYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNFATTKV 543
           ++ ++ PW ++AH   F  M   V G+ ++PL +  F    +
Sbjct: 491 IFKEQAPWATLAHSTQFVPMSAKVSGFTMSPLGDFTFENVDI 532