Pairwise Alignments

Query, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  218 bits (556), Expect = 1e-61
 Identities = 121/302 (40%), Positives = 178/302 (58%), Gaps = 9/302 (2%)

Query: 4   PIPKSVSPASPVDQSLLYPSPYKEFWQAFARNKGAVMGLAFMCLVVFCALFAPWVAPHDP 63
           P+  +  PA+     + +P    E  + F RN  A+ G+A + +V+  A+  PWV P DP
Sbjct: 9   PVASASQPAARPPVRVEHPG--MEALRMFLRNPAAIAGMAMLLIVLAVAIAGPWVYPADP 66

Query: 64  SEQYRDFLLTPPVWLEGGTWQFILGTDELGRDLLSRLIQGARLSLLIGLSSVVMSLIPGI 123
            E  +   LTPP       W   LG+D LGRD+L+ LI G R +LL+G  + ++S++ GI
Sbjct: 67  FE-IKAAPLTPP--FSEDAW---LGSDYLGRDVLTALIYGGRATLLVGAVAALLSVLIGI 120

Query: 124 LLGLLAGFFPQLLGPSIMRLMDVMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYV 183
            LG  AG++   +  ++M+L +    LP+LL A+ +V +  P L+   +AI IVS     
Sbjct: 121 TLGAFAGYYGGKIDAALMKLTEFFQVLPALLFAMVVVTLFSPTLVTVTLAIGIVSWTGTA 180

Query: 184 RLTRAAVMGELNRDYVTAARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAAL 243
           RLTRA  M     ++V A R  GAG  R+++  +LPN + PL+V ATL+  +AIL  A L
Sbjct: 181 RLTRAEFMKYRGLEFVRAERAIGAGDARIIWKVILPNALPPLVVSATLAIGAAILFEAGL 240

Query: 244 GFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 303
            FLGLG  P    WG M+ S+R Y+   WW V+ PG  I ++VLA++L+GDGL DAL+PK
Sbjct: 241 SFLGLG-DPNQMSWGLMIGSSRQYVLSCWWAVAFPGAAIFITVLAVSLIGDGLNDALNPK 299

Query: 304 LK 305
           L+
Sbjct: 300 LR 301