Pairwise Alignments

Query, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

Subject, 274 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  216 bits (550), Expect = 5e-61
 Identities = 117/271 (43%), Positives = 174/271 (64%), Gaps = 8/271 (2%)

Query: 39  VMGLAFMCLVV-FCALFAPWVAPHDPSEQYRDFLLTPPVWLEGGTWQFILGTDELGRDLL 97
           VM  A + LV+   A+ AP  A  DP++      L  P      + + +LGTDELGRD+ 
Sbjct: 11  VMVSALVLLVIAVMAIGAPLFASADPNDTAVLERLKAP------SAEHLLGTDELGRDMY 64

Query: 98  SRLIQGARLSLLIGLSSVVMSLIPGILLGLLAGFFPQLLGPSIMRLMDVMLALPSLLLAV 157
           SR++ GAR SL I   + + +++ G +LGL+AGFF +L  P +MR++D M++ P +LLA+
Sbjct: 65  SRIVHGARYSLAIAALTALGAVVAGTVLGLMAGFFRRLDAP-LMRVVDAMMSFPDILLAI 123

Query: 158 AIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVTAARLAGAGLPRLMFVTV 217
           A+VAILGP L+NTV+A+ +V  P   R+ RA+ +      +V A R  G    R+++  +
Sbjct: 124 ALVAILGPSLVNTVLALVLVYTPRVARVVRASTLVVRELLFVEAVRALGVRTSRILWRHI 183

Query: 218 LPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSL 277
           LPN M+P++VQ +  F+ AIL  A L FLG+GV P  P WGTM+A ++ Y  +A+WVV  
Sbjct: 184 LPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAHQAFWVVLF 243

Query: 278 PGLTILLSVLAINLMGDGLRDALDPKLKNAA 308
           PGL I+ + L++ L+GDG+RD LDPKLK  +
Sbjct: 244 PGLAIIFTALSLQLLGDGVRDLLDPKLKKTS 274