Pairwise Alignments

Query, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

Subject, 300 a.a., ABC transporter, membrane spanning protein (dipeptide) from Agrobacterium fabrum C58

 Score =  229 bits (584), Expect = 6e-65
 Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 6/275 (2%)

Query: 29  WQAFARNKGAVMGLAFMCLVVFCALFAPWVAPHDPSEQYRDFLLTPPVWLEGGTWQFILG 88
           W     N  AV+GL  + L +  +L AP +AP+DP+ Q     L  P       W    G
Sbjct: 30  WLNLKSNPLAVIGLTIIVLFIALSLLAPAIAPYDPATQNLGNRLAFP---NAEHW---FG 83

Query: 89  TDELGRDLLSRLIQGARLSLLIGLSSVVMSLIPGILLGLLAGFFPQLLGPSIMRLMDVML 148
           TDELGRD+LSR++ G R++L + ++ VV+    G+ +G +AG+F  ++   +MR+ DV L
Sbjct: 84  TDELGRDILSRILYGGRVTLGMVIAVVVLVAPIGLAIGCIAGYFGGIVDTVLMRVTDVFL 143

Query: 149 ALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVTAARLAGAG 208
           A P L+LA+A VA L PG+ + ++AIA+ + P Y RL RA  M     D+V A RL GA 
Sbjct: 144 AFPRLILALAFVAALKPGVESAILAIALTAWPPYARLARAETMTVRGSDFVAAYRLTGAS 203

Query: 209 LPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYI 268
             R++   + P C+  LIV+ TL  SS I+ AA+LGFLG+G QPP+PEWG M+A+A+ +I
Sbjct: 204 AWRIIARHIAPLCVPSLIVRITLDMSSIIITAASLGFLGMGAQPPSPEWGAMIATAKRFI 263

Query: 269 ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 303
              WWV ++PG+ I L  LA N +GDGLRD LDPK
Sbjct: 264 FEQWWVATIPGIAIFLVSLAFNFLGDGLRDVLDPK 298