Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter - putative ATP binding subunit from Pseudomonas putida KT2440

Subject, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  302 bits (773), Expect = 9e-87
 Identities = 165/305 (54%), Positives = 208/305 (68%), Gaps = 2/305 (0%)

Query: 2   SLLQINNLNVRFGD-ANAVPVVDGLDLKVDAGEILAIVGESGSGKSVTMMALMGLIDAP- 59
           +LL + +L VRF   A  +  VD L   + AGE LAIVGESG GKSVT MAL+ L+ +P 
Sbjct: 5   ALLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLLRSPP 64

Query: 60  GRITADSLTFDGTDMLKLSGRQRRKVVGKDIAMVFQDPMTALNPSYTVGFQIEEVLRQHL 119
             I+   + F+GT++L LS R  R V G  IAM+FQDP++ALNP  TV  QI E L++H 
Sbjct: 65  AEISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESLKRHT 124

Query: 120 GLKGKAARQRALELLKKVEIPAAESRLDAYPHQLSGGMSQRVAIAMAIAGEPKLLIADEP 179
           GL+G A  +RA+ELL  V IP  + R D YPH  SGGM QRV IA+AIA  P+LLIADEP
Sbjct: 125 GLRGPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLIADEP 184

Query: 180 TTALDVTIQAQIMELLVNLQKERNMALILITHDLAVVAETARRVCVMYAGQAVEVGQVPE 239
           TTALDVT+QAQI++L+V+LQKE  M+L+LI+HDL VVAETA RV VMYAG+ VE   V +
Sbjct: 185 TTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEERPVAD 244

Query: 240 LFDVPAHPYSEALLAAIPEHSIGAERLATLPGIVPGRYDRPVGCLLSPRCPYVQDNCRRQ 299
           LF  P HPY+ AL+ A P   +  E L  +PGIVP   D P GC  +PRC +  + C R 
Sbjct: 245 LFARPLHPYTRALMRARPTPGLRRELLDEIPGIVPSLADLPPGCAFAPRCAHADEACARL 304

Query: 300 RPPLD 304
           +P L+
Sbjct: 305 QPVLE 309