Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter - putative ATP binding subunit from Pseudomonas putida KT2440

Subject, 338 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  271 bits (694), Expect = 1e-77
 Identities = 160/321 (49%), Positives = 204/321 (63%), Gaps = 14/321 (4%)

Query: 3   LLQINNLNVRFGDANAVPVVDGLDLKVDAGEILAIVGESGSGKSVTMMALMGLIDAPGRI 62
           L+ + +L++ F  A  V    GL L V+AGE +A+VGESGSGKS+T +ALM L+    RI
Sbjct: 4   LIDVRDLSIAFPRATPVR---GLSLTVEAGETVALVGESGSGKSLTALALMRLLPDTARI 60

Query: 63  TADSLTFDG-----TDMLKLSGRQRRKVVGKDIAMVFQDPMTALNPSYTVGFQIEEVLRQ 117
            +  + F G     TD+ +L  R  R+V G+DIAMVFQ+PMT+LNP  +VG Q+ EV+R 
Sbjct: 61  ASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNPVLSVGQQVAEVVRL 120

Query: 118 HLGLKGKAARQRALELLKKVEIPAAESRLDAYPHQLSGGMSQRVAIAMAIAGEPKLLIAD 177
           H GL  +AA  RA+ELL  V IP    R+  YPH+LSGGM QRV IA+A+A  P+LLIAD
Sbjct: 121 HEGLSRRAAFARAVELLDLVRIPEPRRRVGDYPHELSGGMRQRVMIAIAVACTPRLLIAD 180

Query: 178 EPTTALDVTIQAQIMELLVNLQKERNMALILITHDLAVVAETARRVCVMYAGQAVEVGQV 237
           EPTTALDVTIQAQ+++LL  L+++ +M L+LITHDL VVAE A RV VMYAG+ VE    
Sbjct: 181 EPTTALDVTIQAQVLDLLDALRRDLSMGLLLITHDLGVVAEWADRVAVMYAGRKVEDAPF 240

Query: 238 PELFDVPAHPYSEALLAAIPEHSIG----AERLATLPGIVPGRYDRPVGCLLSPRCPYVQ 293
             LF  P HPY+  LLAA P    G    A  LA + G +        GC  +PRCP  +
Sbjct: 241 ETLFGAPLHPYTRGLLAASPRLDAGQHYSAGALAEIQGSIASAAGEE-GCAFAPRCPSAR 299

Query: 294 DNCRRQRPPLDPQAHS-LVRC 313
             CR   P L+  A   LV C
Sbjct: 300 ALCRAGAPALEAVAPGHLVAC 320