Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter - putative ATP binding subunit from Pseudomonas putida KT2440

Subject, 342 a.a., Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  362 bits (928), Expect = e-105
 Identities = 186/320 (58%), Positives = 238/320 (74%), Gaps = 1/320 (0%)

Query: 1   MSLLQINNLNVRFGDANAV-PVVDGLDLKVDAGEILAIVGESGSGKSVTMMALMGLIDAP 59
           M LL I +L+V F     V   VDG+ L ++ GE+L IVGESGSGKSVTMMALMGL+  P
Sbjct: 1   MPLLDIKDLHVEFPTQGGVLHAVDGVSLTLEEGEVLGIVGESGSGKSVTMMALMGLVGFP 60

Query: 60  GRITADSLTFDGTDMLKLSGRQRRKVVGKDIAMVFQDPMTALNPSYTVGFQIEEVLRQHL 119
           GR+ A+ + F G ++L +S + RR +VGK++AM+FQ+P T+LNP +T+GFQ+ E LR HL
Sbjct: 61  GRVRAEHMRFAGKELLGISDKARRSLVGKEVAMIFQEPTTSLNPCFTIGFQLMETLRLHL 120

Query: 120 GLKGKAARQRALELLKKVEIPAAESRLDAYPHQLSGGMSQRVAIAMAIAGEPKLLIADEP 179
            L  + A++RA ELL++V IPAA SRL +YPHQLSGGM+QRV IAMAIA  P+LLIADEP
Sbjct: 121 KLDKREAKRRATELLEQVGIPAASSRLGSYPHQLSGGMNQRVMIAMAIACNPRLLIADEP 180

Query: 180 TTALDVTIQAQIMELLVNLQKERNMALILITHDLAVVAETARRVCVMYAGQAVEVGQVPE 239
           TTALDVTIQAQI++LL +LQKER MAL+LITH++ VV+E A+R+ VMYAGQ +E  +V  
Sbjct: 181 TTALDVTIQAQILDLLRDLQKERGMALVLITHNMGVVSEMAQRIAVMYAGQVMEHQRVDH 240

Query: 240 LFDVPAHPYSEALLAAIPEHSIGAERLATLPGIVPGRYDRPVGCLLSPRCPYVQDNCRRQ 299
           LF  P HPY+EALLAA+PE      RLAT+ G+VPG +DRP GCL +PRC YV +     
Sbjct: 241 LFASPQHPYTEALLAALPERVAPEGRLATISGMVPGVHDRPAGCLFAPRCSYVTERACHV 300

Query: 300 RPPLDPQAHSLVRCFYPLNQ 319
           RP L     + VRC +PL +
Sbjct: 301 RPALREWQGAEVRCHFPLGE 320