Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter - putative ATP binding subunit from Pseudomonas putida KT2440

Subject, 335 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  273 bits (699), Expect = 3e-78
 Identities = 156/320 (48%), Positives = 206/320 (64%), Gaps = 12/320 (3%)

Query: 1   MSLLQINNLNVRF----GDANAVPVVDGLDLKVDAGEILAIVGESGSGKSVTMMALMGLI 56
           M LL++NNL +      G A AV    G+   ++ GE L IVGESG GKS+T+M+LMGL+
Sbjct: 1   MPLLEVNNLQIGLQTQRGPAQAVR---GISFSLERGETLGIVGESGCGKSITVMSLMGLL 57

Query: 57  DAPGRITADSLTFDGTDMLKLSGRQRRKVVGKDIAMVFQDPMTALNPSYTVGFQIEEVLR 116
            +  ++T  S+  DG +++ L  +Q  ++ G  I M+FQ+PMTALNP +T+  Q+ E L+
Sbjct: 58  PSSAQVTG-SIKLDGQELVGLPEKQMCQIRGNRIGMIFQEPMTALNPVHTIARQVGEPLQ 116

Query: 117 QHLGLKGKAARQRALELLKKVEIPAAESRLDAYPHQLSGGMSQRVAIAMAIAGEPKLLIA 176
            H GL    AR+ AL LL +V IP A SRLDAYPHQ SGG  QR+ IAMA+A  P LLIA
Sbjct: 117 LHRGLTKAQARKEALSLLDRVGIPDAASRLDAYPHQFSGGQRQRIGIAMALACGPDLLIA 176

Query: 177 DEPTTALDVTIQAQIMELLVNLQKERNMALILITHDLAVVAETARRVCVMYAGQAVEVGQ 236
           DEPTTALDVTIQ Q+++L+ +L KE  MA+ILI+HDL V+A + +R+ VMY G AVE G 
Sbjct: 177 DEPTTALDVTIQKQVLDLIQSLVKEMGMAMILISHDLGVIANSVKRMLVMYGGSAVESGP 236

Query: 237 VPELFDVPAHPYSEALLAAIPE-HSIGAERLATLPGIVPGRYDRPVGCLLSPRCPYVQDN 295
              +F   AHPY+  L AA P   ++ A RL T+ G VP   D P GC  + RC +  D 
Sbjct: 237 TDTVFAGRAHPYTRGLFAARPAIGAVRAGRLPTIRGSVPELVDMPRGCAFAGRCAHTIDL 296

Query: 296 CRRQRP--PLDPQAHSLVRC 313
           C+  RP   L P  H+ VRC
Sbjct: 297 CQSTRPQATLLPNDHT-VRC 315