Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter, binding subunit from Pseudomonas putida KT2440

Subject, 332 a.a., Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  316 bits (809), Expect = 6e-91
 Identities = 160/325 (49%), Positives = 224/325 (68%), Gaps = 9/325 (2%)

Query: 2   AVVLSARELTRHYEV-SRGLFKGHALVRALNGVSFELEAGKTLAVVGESGCGKSTLARAL 60
           A +L  REL +HY    R L      ++A++GVSF +  G+TL++VGESGCGK+T A+++
Sbjct: 7   APLLRVRELRKHYTAPKRWLSPRKPPIQAVDGVSFSVARGETLSLVGESGCGKTTTAKSV 66

Query: 61  TLIEEPSSGSLQIAGTEVKGASKAERKQLRRDVQMVFQSPYASLNPRQKIGDQLAEPLLI 120
             + EPS+GS+Q+ G E+   S  E +  RRD+Q++FQ PYASLNPR   GD +AEP+  
Sbjct: 67  LRLVEPSAGSVQLEGEELLTLSPEEMRMRRRDLQIIFQDPYASLNPRLTAGDIVAEPMRN 126

Query: 121 NTSLSK---AERRDKVQKMMEQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVA 177
            +SL     AERR++VQ +  +VGLRPE  ++YPH FSGGQRQR+ +ARA+ L PK++V 
Sbjct: 127 FSSLGTGGAAERRERVQWLFSRVGLRPEAAKKYPHEFSGGQRQRLGIARALALNPKLIVC 186

Query: 178 DEPTSALDVSIQAQVLNLFMDLQKEFNTAYVFISHNLAVVRHVADQVLVMYLGRPAEMGP 237
           DEP SALDVS+QAQV+NL MDLQ EF  AY+F++H+LAVVRH++ +V VMYLG   E+  
Sbjct: 187 DEPVSALDVSVQAQVVNLLMDLQAEFGIAYLFVAHDLAVVRHISHRVAVMYLGHIVEIAD 246

Query: 238 KEDIYAKPLHPYTQALLSATPAIHPDPLKPKIRIVGELPNPLNPPDGCAFHKRCPYATER 297
           ++ +++ PLHPYT+ LLSA P  +P     ++ + G+ P+P NPP GC FH RCP A   
Sbjct: 247 RDTLFSAPLHPYTEILLSAVPVPNPRTPARRMLLQGDPPSPANPPSGCRFHTRCPMAQAV 306

Query: 298 CAKEVPALRQVSTRQ-----VACHY 317
           C ++VP L +  +       VACH+
Sbjct: 307 CKEKVPELSERPSSSNGGHWVACHF 331