Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter, binding subunit from Pseudomonas putida KT2440

Subject, 688 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  275 bits (703), Expect = 2e-78
 Identities = 143/301 (47%), Positives = 189/301 (62%), Gaps = 2/301 (0%)

Query: 17  SRGLFKGHALVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIEEPSSGSLQIAGT 76
           S GL K   +  A++ V   +  G+ + +VGESGCGKSTL R    +  P+ G + + G 
Sbjct: 384 SVGLSKPPVVTHAVDVVDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTPTEGEVIVGGK 443

Query: 77  EVKGASKAERKQLRRDVQMVFQSPYASLNPRQKIGDQLAEPLLINTSLSKAERRDKVQKM 136
            V   S  E+   R  +QMVFQ PYASLNPR ++   + E  +++     A + D V   
Sbjct: 444 PVASLSAQEQLAARLRIQMVFQDPYASLNPRLRVSRIVGEAAMLHGLTDAAGQDDYVCAQ 503

Query: 137 MEQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLF 196
           +E+ GL P    RYPH FSGGQRQRI +ARA+ +QP +LV DE  +ALDVSIQAQ+LNLF
Sbjct: 504 LERAGLDPALRHRYPHQFSGGQRQRIGIARALAVQPSMLVCDEAVAALDVSIQAQILNLF 563

Query: 197 MDLQKEFNTAYVFISHNLAVVRHVADQVLVMYLGRPAEMGPKEDIYAKPLHPYTQALLSA 256
           MDL+ +   AY+FISH+L V+ H+ D+V+VMYLGR  E  P  D++A+P HPYTQALL+ 
Sbjct: 564 MDLRDQLGLAYLFISHDLGVIEHLCDRVVVMYLGRVVESAPVADLFARPAHPYTQALLAE 623

Query: 257 TPAIHPDPLKPKIRIVGELPNPLNPPDGCAFHKRCPYATERCAKEVPALRQVSTRQ-VAC 315
            P+I          I GE+P+P+ PP GC FH RCP A  RC  EVP LR ++ R   AC
Sbjct: 624 IPSIDARGTTFS-AIRGEIPSPIAPPSGCHFHPRCPQAMPRCRTEVPRLRGIAIRHATAC 682

Query: 316 H 316
           H
Sbjct: 683 H 683



 Score =  193 bits (491), Expect = 9e-54
 Identities = 112/306 (36%), Positives = 172/306 (56%), Gaps = 14/306 (4%)

Query: 5   LSARELTRHYEVSRGLFKGHALVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIE 64
           L  R L   +    G+         ++GVSF L  GK L +VGESG GKS    ++  + 
Sbjct: 14  LEVRNLQTRFHTRAGVLP------VVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIMGLV 67

Query: 65  EP----SSGSLQIAGTEVKGASKAERKQLRRD-VQMVFQSPYASLNPRQKIGDQLAEPLL 119
           +P      G +   G E+      ER++LR + + M+FQ P A+LNP  ++  Q+ E + 
Sbjct: 68  DPPGKVEGGQVLFQGRELTQLPAIERRELRGNRIAMIFQDPMATLNPVLRVDTQMIEAVK 127

Query: 120 INTSLSKAERRDKVQKMMEQVGLRP--EHYQRYPHMFSGGQRQRIALARAMMLQPKVLVA 177
            +  +S  E R   +  +  +G+    E  + YPH  SGG RQR+A+A AM+  P +++A
Sbjct: 128 AHKRVSTEEARRHARDTLGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHGPDLIIA 187

Query: 178 DEPTSALDVSIQAQVLNLFMDLQKEFNTAYVFISHNLAVVRHVADQVLVMYLGRPAEMGP 237
           DEPT+ALDV+IQAQ+L+    L +E  T+ ++ISH+L+VV  +AD++ VMY GR  E G 
Sbjct: 188 DEPTTALDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGRIVEHGT 247

Query: 238 KEDIYAKPLHPYTQALLSATPAIHPDPLKPKIRIVGELPNPLNPPDGCAFHKRCPYATER 297
             D+   P HPYT+ L+ + P+ +    + + +I G  P+ L  P GCAF  RCP+A   
Sbjct: 248 VADVLDHPQHPYTRGLIDSLPSANERGARLR-QIQGMTPSLLKMPAGCAFAPRCPHADAA 306

Query: 298 CAKEVP 303
           C ++ P
Sbjct: 307 CEQQRP 312