Pairwise Alignments

Query, 322 a.a., dipeptide ABC transporter, binding subunit from Pseudomonas putida KT2440

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  271 bits (692), Expect = 4e-77
 Identities = 137/284 (48%), Positives = 197/284 (69%), Gaps = 6/284 (2%)

Query: 4   VLSARELTRHYEVSRGLF-KGHALVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTL 62
           +LS ++LT  +++  GLF +    V A+  VSF+L  G+TL++VGESGCGKST  R++T 
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 63  IEEPSSGSLQIAGTEVKGASKAERKQLRRDVQMVFQSPYASLNPRQKIGDQLAEPLLINT 122
           + EP+SG++ + G EV    +   + +RR VQMVFQ P+ASL+PR  +G  + EP + + 
Sbjct: 374 LIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHR 433

Query: 123 SLSKAERRDKVQKMMEQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTS 182
              KA+ R+K   ++E+VGL P+  +R+PH FSGGQRQRIA+AR++ML PKV+VADE  S
Sbjct: 434 LGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVS 493

Query: 183 ALDVSIQAQVLNLFMDLQKEFNTAYVFISHNLAVVRHVADQVLVMYLGRPAEMGPKEDIY 242
           ALDVSI+AQV NL +DLQ+  N A++FISH++AVV  V+ +V VMYLG   E+GP+  ++
Sbjct: 494 ALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVF 553

Query: 243 AKPLHPYTQALLSATPAIHPDPLKPKIR---IVGELPNPLNPPD 283
             P HPYT+ L+SA P   PDP + +IR      E+ +P+ P D
Sbjct: 554 DNPQHPYTKKLMSAVPV--PDPARRQIRRNMATDEIKSPIRPVD 595



 Score =  185 bits (470), Expect = 2e-51
 Identities = 104/264 (39%), Positives = 166/264 (62%), Gaps = 13/264 (4%)

Query: 4   VLSARELTRHYEVSRGLFKGHALVRALNGVSFELEAGKTLAVVGESGCGKS-TLARALTL 62
           VLS + LT  + V  G     ++VR    +SF++   +T+A+VGESG GKS T    + L
Sbjct: 18  VLSVQNLTTSFRVDGGW---KSVVR---NMSFDIAPRETVAIVGESGSGKSVTSLSIMRL 71

Query: 63  IEEPSS---GSLQIAGTEVKGASKAERKQLR-RDVQMVFQSPYASLNPRQKIGDQLAEPL 118
           ++  +S   G + + G ++    + E +++R +D+ M+FQ P  SLNP   IG Q+AE L
Sbjct: 72  LDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEAL 131

Query: 119 LINTSLSKAERRDKVQKMMEQVGL--RPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLV 176
            ++  +S +  + +V +++E+V +      +  YPH FSGG RQR+ +A A+  +PK+L+
Sbjct: 132 TVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLI 191

Query: 177 ADEPTSALDVSIQAQVLNLFMDLQKEFNTAYVFISHNLAVVRHVADQVLVMYLGRPAEMG 236
           ADEPT+ALDV+IQ Q+L+L   LQ+E   + +FI+H++ VV  VAD+ +VM+ G   E G
Sbjct: 192 ADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETG 251

Query: 237 PKEDIYAKPLHPYTQALLSATPAI 260
             +DI+ +  HPYT+ALLSA P +
Sbjct: 252 TTDDIFHRGQHPYTRALLSAVPKL 275