Pairwise Alignments

Query, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 364 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  408 bits (1048), Expect = e-118
 Identities = 201/359 (55%), Positives = 261/359 (72%), Gaps = 3/359 (0%)

Query: 2   RTFLLAPLMLAASVASAAE--TVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLD 59
           +T L   LM A + A+ A+   + +YNWS Y+APDT+ NF++ SGI   YDV+DSNETL+
Sbjct: 6   KTLLALSLMGAMAGAAQADDKVLHVYNWSDYIAPDTIANFEKESGIKVVYDVFDSNETLE 65

Query: 60  GKLMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQY 119
            KL+ G SGYD+V PSN+F+A+QI+    + LDKSKL N+ NLN  LLKA+ V+DP N++
Sbjct: 66  AKLLAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLSNYDNLNKSLLKAVSVSDPDNKH 125

Query: 120 GFPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPI 179
            FPY+WGS GIGYN +KVKA LG +  +DSWD++ KPE ++KLKSCGV+ LD+  E+LP+
Sbjct: 126 AFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVLLKPENIAKLKSCGVSFLDSPTEMLPV 184

Query: 180 ALHYLGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQ 239
           ALHYLGLP  +Q   D ++A+DL +K+RP I YFHSSKY  DLANG+ICV VG+SGD+ Q
Sbjct: 185 ALHYLGLPTDTQKKADLKQAEDLFLKIRPSIGYFHSSKYISDLANGNICVAVGYSGDIEQ 244

Query: 240 AKNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISN 299
           AK+RA EA   VKV Y IPKEGA  +FDMVA+P DA +  A Y +MNYLL+P+VMA I+N
Sbjct: 245 AKSRAAEAGGKVKVAYDIPKEGAGSFFDMVAIPKDAENVDAAYKFMNYLLKPQVMAEITN 304

Query: 300 HVQYANGNLKADGLVDPAMKGNTMIYPSDEVMGKLYALEAMPAKIDRIRTRIWTSIKAG 358
            V + NGN KA  LVD  +  +  IYP  +V  KLYA+  +PA   R  TR WT IK+G
Sbjct: 305 SVHFPNGNEKATALVDKEITSDPGIYPPADVQAKLYAIADLPAATQREMTRSWTKIKSG 363