Pairwise Alignments

Query, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC62

 Score =  182 bits (462), Expect = 1e-50
 Identities = 105/324 (32%), Positives = 171/324 (52%), Gaps = 19/324 (5%)

Query: 9   LMLAASVASAAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLDGKLMTGNSG 68
           L ++A+ A    T+  YNW+ YV P  L+ F + +GI   Y  Y+SNET+  KL T   G
Sbjct: 16  LGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDG 75

Query: 69  -YDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYGFPYLWGS 127
            YD+V PS +++ +  +   ++++DKSKL N+ NL+P +L   +  DP N Y  PY+WG+
Sbjct: 76  AYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLN--KPFDPNNDYSIPYIWGA 133

Query: 128 TGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPIALHYLGLP 187
           T IG N D V     D   V SW  ++KPEY   L      + D+  E+  +AL  LG  
Sbjct: 134 TAIGVNGDAV-----DPKSVTSWADLWKPEYKGSL-----LLTDDAREVFQMALRKLGYS 183

Query: 188 HHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQAKNRADEA 247
            ++ DPK+ E A + L K+ P ++ F+S         G++ + + ++G    A+      
Sbjct: 184 GNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQA---- 239

Query: 248 NNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISNHVQYANGN 307
             G  +    PKEG   W D +A+P +A +++     +N+LL+P+V   ++  + Y   N
Sbjct: 240 --GTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPN 297

Query: 308 LKADGLVDPAMKGNTMIYPSDEVM 331
           L A  L+ P +  +  +YP  E +
Sbjct: 298 LAARKLLSPEVANDKTLYPDAETI 321