Pairwise Alignments

Query, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 370 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotF from Escherichia coli ECRC100

 Score =  402 bits (1032), Expect = e-116
 Identities = 196/358 (54%), Positives = 256/358 (71%), Gaps = 4/358 (1%)

Query: 5   LLAPLMLAASVASAA---ETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLDGK 61
           L+A  ++A SV + A   +T+ IYNWS Y+APDT+ NF++ +GI   YDV+DSNE L+GK
Sbjct: 12  LVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGK 71

Query: 62  LMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYGF 121
           LM G++G+D+V PS  F+ RQ+     + LDKSKLP W NL+P LLK +  +DP N++  
Sbjct: 72  LMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAM 131

Query: 122 PYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPIAL 181
           PY+W +TGIGYN+DKVKAVLG+NAPVDSWDLI KPE + KLKSCGV+ LD   E+    L
Sbjct: 132 PYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVL 191

Query: 182 HYLGLPHHSQDPKDYE-KAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQA 240
           +YLG   +S    DY   A DLL+K+RP I YFHSS+Y  DLANGDICV +G++GDV QA
Sbjct: 192 NYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQA 251

Query: 241 KNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISNH 300
            NRA EA NGV V +SIPKEGA  +FD+ AMP DA ++   Y ++NYLL+P+V+A+IS+H
Sbjct: 252 SNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDH 311

Query: 301 VQYANGNLKADGLVDPAMKGNTMIYPSDEVMGKLYALEAMPAKIDRIRTRIWTSIKAG 358
           V YAN N  A  LV   ++ N  IYP  +V  KL+ L+    KIDR+RTR WT +K+G
Sbjct: 312 VFYANANKAATPLVSAEVRDNPGIYPPADVRAKLFTLKVQAPKIDRVRTRAWTKVKSG 369