Pairwise Alignments

Query, 247 a.a., putative Glycine betaine/carnitine/choline ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 217 a.a., choline ABC transporter permease from Pseudomonas simiae WCS417

 Score =  127 bits (318), Expect = 2e-34
 Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 12/196 (6%)

Query: 55  HLVLVLASMAAALAVGIPAGIALSRPHRVDKAERFMQFFNVGNTIPPLAVLAIALSIL-- 112
           H+ LV  ++  A+ +G+P GI ++R   +  A        V  T+P +A+  + L     
Sbjct: 22  HITLVGIAVILAILIGVPLGILMTRFPTL--AGPLQASATVLLTVPSIALFGLLLPFYSK 79

Query: 113 ---GIGAGPAIFALFLASLLPIVRNTYEGLKNVPASLKEAATGIGMTPRQQLWQVELPNA 169
              G+G  PAI A+FL SLLPI+RNTY  L  V   ++EAA GIGMT  Q+L  VELP A
Sbjct: 80  FGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIA 139

Query: 170 VPIIVGGVRVALALNVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALLALVL 229
           VP+I+ GVR A+ +N+G   +A  IGA  LG LI   I+ ++   L++GA   +LLA+  
Sbjct: 140 VPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRSDMSMLIVGAVLVSLLAIFA 199

Query: 230 DAAVSFSSRRWLERGL 245
           D  +     +WL+R L
Sbjct: 200 DLLL-----QWLQRSL 210