Pairwise Alignments

Query, 247 a.a., putative Glycine betaine/carnitine/choline ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 290 a.a., Glycine betaine/choline transport system permease protein OusW from Azospirillum sp. SherDot2

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 56  LVLVLASMAAALAVGIPAGIALSRPHRVDKAERFMQFFNVGNTIPPLAVLAIALSILGIG 115
           L LV++S   AL V IPAG+      +VD++       ++  T+PP   L   +++LG G
Sbjct: 99  LALVISSTILALLVAIPAGVLTGFAPKVDRS--LEPVLDLVQTLPPYIYLLPGIALLGYG 156

Query: 116 AGPAIFALFLASLLPIVRNTYEGLKNVPASLKEAATGIGMTPRQQLWQVELPNAVPIIVG 175
              A+ A F+ ++ P  R T  G++  P    E     GMT  Q   ++ LP AVP I+ 
Sbjct: 157 PATALAATFVVAVPPAFRLTALGIRLTPNEFLELGQSTGMTNWQMFAKIRLPFAVPSIMA 216

Query: 176 GVRVALALNVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALLALVLDAAVSF 235
           G+  +L +  G   +A ++G+  LG  I+  +   +  + + GA    +L +VLD     
Sbjct: 217 GINQSLMMAFGMVVIAGIVGSGGLGETIYKAVRTLDIAKSIDGAIAIVILTIVLDRLTQG 276

Query: 236 SSR 238
           ++R
Sbjct: 277 AAR 279



 Score = 23.5 bits (49), Expect = 0.005
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 98  TIPPLAVLAIALSIL---------GIGAGPAIFALFLASLLPIVRNT 135
           +IPP  V+A+A +++         G+ AG A+    L  L P   +T
Sbjct: 52  SIPPFYVIAVAFALIGWRVVGLRFGVLAGAALVGCALMGLWPETMST 98