Pairwise Alignments

Query, 313 a.a., putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 303 a.a., ABC transporter, substrate binding protein (proline/glycine/betaine) from Agrobacterium fabrum C58

 Score =  124 bits (312), Expect = 2e-33
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 14  RIALLLGAALLFAGFAQAAEKPLIRIGARVFTEQTVLAEITAQYLRANGFDVRVIGGLGS 73
           R+  L GA L  A     A+  ++ + +++ TE  VL  I    L  N  +      LG+
Sbjct: 3   RLMTLTGAGLALAFSVSIAQAQVV-VSSKIDTEGGVLGNIILAVLNQNKIETTDRIQLGA 61

Query: 74  S-LARQAQETGQLDLMWEYTGVSLVSYNHIDERM-PSAEATYAKVKELDAKKD-LIWLTP 130
           + + R+A   G++D+  EYTG +   ++  D+ +   A   Y + K LD   + ++WL P
Sbjct: 62  TPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKGYEEAKTLDYDANKIVWLAP 121

Query: 131 SKFSNTYALGLPKQVAEAYPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGLVGLKE 190
           S  +NT+A+ L K VA+    + ++SD  + +        ++A  +EF N    L   + 
Sbjct: 122 SPANNTWAIALRKDVADKN-NLKTLSDFGKYVAGGG--TVVLAASSEFVNSAAALPAFQT 178

Query: 191 MYDLQVGRANIRQMDAG-----LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLEDDKHYF 245
            Y   +    +  +  G     +   A   N   A +VY TDG ++   L +LEDDKH  
Sbjct: 179 TYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYGTDGGIAPSGLVVLEDDKHVQ 238

Query: 246 PDYTAAPVVRKAVLDANPQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAAAFLRE 305
           P Y  AP++R+ VL  +P +  LLKP+ E+LD  T++ LNA+V V  +    VA  FL +
Sbjct: 239 PVYQPAPIIREEVLKKHPNIEELLKPVFEKLDLATLQDLNARVQVGGEQAKTVAMDFLTK 298

Query: 306 H 306
           +
Sbjct: 299 N 299