Pairwise Alignments

Query, 809 a.a., FecA-like outer membrane receptor from Pseudomonas putida KT2440

Subject, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score = 93.6 bits (231), Expect = 4e-23
 Identities = 88/272 (32%), Positives = 129/272 (47%), Gaps = 56/272 (20%)

Query: 14  ALALAVST-VAVDSQAAEAGNTLQIQAQPLDSALNQLGQQTSLQLFFSPELVAGKQAPAV 72
           ALALAVS  VA   QA E    L I AQ L SAL + G+Q +LQ+ +SP  VAGK + A+
Sbjct: 26  ALALAVSLPVAGYVQAQEI--ELDIPAQALGSALQEFGRQANLQVLYSPTDVAGKNSTAI 83

Query: 73  SGNLAPVQALQQLLQGSGLTFEMTGDTVVVKPLPTTLDLGSGSLELAPTDIKVVGDWLGD 132
            G L P QA+  LL G+  T  ++G+ + V     T    S  LEL+PT  +V G+ LG+
Sbjct: 84  KGKLDPQQAINTLLAGTSTTHSLSGNALTV-----TAAGASAGLELSPT--QVTGNVLGN 136

Query: 133 AQQSVVQNHPG-----------------ARTVVRREAMVEKGAMNVRDVLRGIPGVQVQ- 174
             +      PG                 + TV+ R+ + + G  NV DV+R  PG+ V  
Sbjct: 137 ITEGSGSYTPGTIATATRLTLTPRETPQSITVITRQHIEDFGLNNVDDVMRHTPGITVSA 196

Query: 175 -DSNGTGGSDLSLNVGVRGLTSRLSPRSTVLIDGIPAAFAPYGQPQLSMAPISSGN---- 229
            D++ T       N   RG +      ++   DGIP+     G         S+GN    
Sbjct: 197 YDTDRT-------NYYSRGFSV-----NSFQYDGIPSTVRNVG--------YSAGNTLSD 236

Query: 230 ---LDSIDVVRGAGSVRYGPQNVGGVINFVTR 258
               D ++V++GA  +  G  ++G  IN + +
Sbjct: 237 MAIYDRVEVLKGATGLLNGAGSLGATINLIRK 268



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 58/266 (21%), Positives = 94/266 (35%), Gaps = 42/266 (15%)

Query: 545 LPALSVMYHVSDAWKVFANYETSFGSLQYFQLGQGGSGNSTANGLEPEKAKTYEIGTRYD 604
           +P   V+Y ++D    +A+Y         FQ  +    +     LEP++ + YE+G + D
Sbjct: 567 VPYAGVVYDLNDNISAYASYT------DIFQPQESTYKDRNQKLLEPDEGQNYELGLKGD 620

Query: 605 NGGFAGELTAFYIDFDDELQYISNDVGWTNLGATKH----------QGIEASVRYDLAGL 654
                   +  Y +  +  + IS+D       A  +          +G EA V  +L+  
Sbjct: 621 FLDGRLNASVAYFEVHETNRAISDDAYNNQTPAPSNYAFKGSKAVTKGYEAEVSGELS-- 678

Query: 655 DPRLDGLSVSGGYTYTRATYEGDIPGFKGRDLPFYSRQVATAGVRYAVN-RWTWNLDAYA 713
                G  V GGYT+     + D             ++++T    + VN   T+ L    
Sbjct: 679 ----PGWQVQGGYTHKIVRDDND-------------KKISTFEPEHQVNLNTTYKLK--G 719

Query: 714 QSKQRAPGTGINADGSFNGDYITEPSADGQYGDIPGYVTWHARGGYEFGPDMSNLKLAAG 773
              Q   G G+        +    P    Q      Y        Y+      NL     
Sbjct: 720 DLDQFTIGGGLRWQSKGWYEIYNSPLNTNQDITQKAYWLVDLMTRYQV---TKNLSATVN 776

Query: 774 VKNLFDKQYFTRSSDNNAGLYVGEPR 799
             N+FDK Y+T     N+  Y GEPR
Sbjct: 777 FNNIFDKSYYTNVGFYNSAAY-GEPR 801