Pairwise Alignments

Query, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 74.7 bits (182), Expect = 7e-19
 Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 11/147 (7%)

Query: 7   FLDHYHELIGTWTRK-LRSRQQAEDLTHDAFVRVLETPR--EQVEQPRAYLHQAARNIAV 63
           F   +H  +  W R+ L     A DL  D FVRVL  P+    + +PRAYL   A+ +  
Sbjct: 15  FYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKGVVS 74

Query: 64  DGFRREDRRQALEREAFEEGATGSG----DPEAYVHALELADSVERALAELPLNCRQVFI 119
           + +RR    QALER   E  A         PE  +  L+  D ++  L  +    R+ F+
Sbjct: 75  EHWRR----QALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKAREAFV 130

Query: 120 WQKLEGLTQAEIAERMGLSKNMVEKYM 146
             +LEGLT A IAER+ +S+  V++YM
Sbjct: 131 LSQLEGLTYAAIAERLQISERTVKRYM 157