Pairwise Alignments

Query, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

Subject, 201 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 71.2 bits (173), Expect = 9e-18
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 14  LIGTWTRKLRSRQQAEDLTHDAFVRVLETPR-EQVEQPRAYLHQAARNIAVDGFRREDRR 72
           L G   R L S  + ED+  +   R   T   E V   RAYL   ARN+ +D  RR ++ 
Sbjct: 22  LRGRLRRILPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNLVIDTARR-NKV 80

Query: 73  QALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLEGLTQAEIA 132
            + E  A  E   G    EA +HA E    VE  +  LP  CR+VFI +++   +  EIA
Sbjct: 81  VSFETIADLELLGGENTIEAQLHAREALRQVEAIVDSLPTQCRRVFILRRIHEKSMLEIA 140

Query: 133 ERMGLSKNMVEKYMIRTL 150
           E M LS + VEK++ + +
Sbjct: 141 EEMSLSVSTVEKHLAKAI 158