Pairwise Alignments

Query, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 96.7 bits (239), Expect = 4e-25
 Identities = 53/155 (34%), Positives = 93/155 (60%), Gaps = 4/155 (2%)

Query: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPREQVE--QPRAYLHQAARNIAVD 64
           F +HY +L+   TR++  RQ+A D+  + +++++    + V     R+++ + A N+A+D
Sbjct: 13  FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAID 72

Query: 65  GFRREDRRQAL--EREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQK 122
             RRE R  A   + +   E A  +  PEA + A E    +++AL +LP N RQ  +  +
Sbjct: 73  ALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNR 132

Query: 123 LEGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHL 157
           +EGLTQ ++A+R+G+S++MV KY+ + LRH R  L
Sbjct: 133 VEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL 167