Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 627 a.a., protein translocase subunit SecD from Rhodanobacter sp000427505 FW510-R12

 Score =  468 bits (1203), Expect = e-136
 Identities = 274/638 (42%), Positives = 385/638 (60%), Gaps = 30/638 (4%)

Query: 2   LNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDA 61
           ++ +P WKYAL+ LV++ G IY+ PN +P  PAVQ++    A  +NQA   +V  AL   
Sbjct: 1   MSDFPRWKYALVALVMLFGIIYALPNAFPPVPAVQVTANRDAPPINQAVQQKVQAALTAK 60

Query: 62  KIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGAS 121
           KIAV    + E    L    N + Q    + ++ ALGD Y VA  L    P+WL  +GA 
Sbjct: 61  KIAVTDVFM-EGDHLLATFANSDVQKSGLEEIKAALGDGYTVAFKLQSNVPRWLSAIGAR 119

Query: 122 PMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGG----- 176
            M LGLDL GGVHFL++VD   A+  +   Y  ++++LLR++ +RY S+ +   G     
Sbjct: 120 AMPLGLDLQGGVHFLMQVDQKDAIEKQENSYADDIRSLLRQKNIRYESVTRNAAGGQGIA 179

Query: 177 IMLGFADDATREQARALIRKNFNDFDLTT-TDRNELAVLRLALTQAKVAEIREYSIKQNL 235
           ++L  ADD  R  A   I   + D  +++     +  VL +A+   K+ E+   +I QNL
Sbjct: 180 VILRSADD--RSTASDAIANEYVDLLVSSGASTGDRFVLNVAIKPDKLRELSRSAITQNL 237

Query: 236 TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFG-AEPGAS 294
            T+RNR+N LGV+EPL+Q+QG +RIVVEL GVQD AEAK+++G  A L++R G  +PG +
Sbjct: 238 GTLRNRINALGVSEPLIQQQGDSRIVVELAGVQDPAEAKKLIGAVATLQYRPGIGQPGDT 297

Query: 295 KAT-----------TEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEH-GRPQVNIRL 342
           +A              ++  R   R   V + +I+TG+Q+ DA +  D+  G P+V++ L
Sbjct: 298 RAVEAARTGNIPPDANLYYMRGDNRPVLVSKQIIVTGNQLVDASSGIDQQSGTPKVDVTL 357

Query: 343 DGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLA 402
           +  G + M   T +NVG+ MAV+++EQ     Y  + V G  K+V V    E   +I+ A
Sbjct: 358 NAAGAKKMGDFTNANVGKPMAVLYVEQV----YETKVVDG--KEVRVPKITET--VINDA 409

Query: 403 TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDA 462
           TIQSP   QF+ TGL    E+SELALLL+ G LAAPM   EE  IG SLG DNI KG  A
Sbjct: 410 TIQSPFSKQFQTTGLGSAKEASELALLLKGGALAAPMDIVEESVIGASLGQDNIDKGFKA 469

Query: 463 SLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMA 522
            + G+  V L     Y+ FG++A IAL  N+V+LLA+MSL+G TLT+PG+AGIVLT+GMA
Sbjct: 470 VMLGLALVLLAAAIYYKLFGLVADIALFFNLVVLLAVMSLIGVTLTMPGVAGIVLTLGMA 529

Query: 523 VDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKG 582
           +DANVLI  RIREE+  G S   AI  G+ +A+S I+DAN+T L+    L  MGTG +KG
Sbjct: 530 IDANVLICERIREELRNGSSPHAAIRAGYEKAWSTILDANVTHLIAALALTTMGTGAIKG 589

Query: 583 FAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLWV 620
           F VT+ +GI TS+FT+V +T A      G R +K L V
Sbjct: 590 FGVTLMIGILTSLFTSVTLTHAFTAAIHGHRKLKTLSV 627