Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

 Score =  314 bits (804), Expect = 7e-90
 Identities = 194/528 (36%), Positives = 302/528 (57%), Gaps = 56/528 (10%)

Query: 102 VVALNLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLR 161
           V++  +    P WL    +S + LGLDL GG H LLEVD       R +    EV+ +LR
Sbjct: 27  VLSPGMLDHLPSWL---ASSRVTLGLDLQGGSHILLEVDGPALRRERTEQLRDEVRRVLR 83

Query: 162 KERVRYRSLPQQDGGIMLGFADDATREQARALIRK------------NFNDFDLTTTDRN 209
            +++ Y +L  +D  + L   D    ++A   +RK            +  + DLT +  +
Sbjct: 84  DQKIGYSNLALRDTSVTLRLRDPNDTQKAVTELRKLAAPVTNALFGNSSGEMDLTVSSGS 143

Query: 210 ELAVLRLALTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQD 269
           +   + L LT A +      ++ Q++  +R R+++LG  EP +QRQG +RI+V++PG+QD
Sbjct: 144 D-GTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQD 202

Query: 270 TAEAKRILGKTANLEFRF--------GAEPGASKATTEVFEFREGGRSAAVERGLIITGD 321
               K +LG+TA L FR          A  G +   +EV + ++ G+   VE+ + ++G+
Sbjct: 203 PQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPESEVLKGQD-GQPYLVEKQVRVSGE 261

Query: 322 QVTDAQASFDEHGR-PQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAV 380
            + DAQ  FD++ R P V+ R + +G +  +  ++ +VGR  A++               
Sbjct: 262 DLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQESVGRPFAIVL-------------- 307

Query: 381 GGVEKDVAVQSFVEEKKIISLATIQSP-LGSQFRITGLNGQGESSELALLLRAGGLAAPM 439
                         + ++IS   I+ P LG   +I+G     ++++LA+LLRAG L AP+
Sbjct: 308 --------------DNQVISAPVIREPILGGAGQISGSFTVQQANDLAILLRAGALPAPL 353

Query: 440 YFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLAL 499
              EERT+GPSLGAD+I  G  A+      V++F++A+Y  FG+ A IALA +++L+ +L
Sbjct: 354 KVVEERTVGPSLGADSIQAGKTAAYVAGGLVTVFMLAVYGLFGLFALIALAVHIILMFSL 413

Query: 500 MSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIV 559
            S+LGATLTLPGIAG+VLT+GMAVD+NV+IF R+R+E   G S   AI +GF  A   I+
Sbjct: 414 QSVLGATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTIL 473

Query: 560 DANLTTLLVGGILFAM-GTGPVKGFAVTMSLGIFTSMFTAVMVTRALV 606
           DAN+T+L    ILF M G+GPV+GFAVT  LG+ T+MFTA  +TR ++
Sbjct: 474 DANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMI 521