Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

 Score = 1022 bits (2642), Expect = 0.0
 Identities = 527/623 (84%), Positives = 574/623 (92%), Gaps = 4/623 (0%)

Query: 1   MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD 60
           MLNKYPLWKY LI+ VL +GFIYSAPNLYPDDPA+QISGAS+ LQVNQADL+R SKAL D
Sbjct: 1   MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTTLQVNQADLERASKALND 60

Query: 61  AKIAVKGASL--GEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNL 118
           A I VK A+L  G KG GL+RLT QEDQLPAKDVVRK +GDDYVVALNLAQTTPQWLR++
Sbjct: 61  AGIQVKAATLAAGAKG-GLLRLTKQEDQLPAKDVVRKVMGDDYVVALNLAQTTPQWLRSI 119

Query: 119 GASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIM 178
           GA PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEG+VK+LLRKER+RYRSLPQ +G I 
Sbjct: 120 GAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLNGAIQ 179

Query: 179 LGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTV 238
           LGF+D+A+REQARALIRKNFNDFD+   D N  AVLRLA++ AK+AEIREYSIKQNLTTV
Sbjct: 180 LGFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTV 239

Query: 239 RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATT 298
           RNRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR  AEPGA++AT 
Sbjct: 240 RNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGATRATA 299

Query: 299 EVFEFREGGRSAA-VERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSN 357
           E FEFREG R  A +ERGLIITGDQVTDA+A F EHG P+VNIRLDGHGGELMSRATRSN
Sbjct: 300 EEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSN 359

Query: 358 VGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGL 417
           VGRSMAVIFIEQ+P+T Y KQ V GVEKDV VQ+F EEKKIISLATIQSPLG+QFRITGL
Sbjct: 360 VGRSMAVIFIEQRPITTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL 419

Query: 418 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI 477
           NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DA+LWGMLFVSLFIIAI
Sbjct: 420 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAI 479

Query: 478 YRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI 537
           YR FGV+AT+ALAGNMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI
Sbjct: 480 YRFFGVIATVALAGNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI 539

Query: 538 AAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT 597
           AAGM+VQRAI+EGF RA++AI+D+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT
Sbjct: 540 AAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT 599

Query: 598 AVMVTRALVNLTCGGRDIKKLWV 620
           A+MVTRA+VNL  GGRD KKLW+
Sbjct: 600 AIMVTRAMVNLIFGGRDFKKLWI 622