Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

 Score =  466 bits (1198), Expect = e-135
 Identities = 266/636 (41%), Positives = 402/636 (63%), Gaps = 50/636 (7%)

Query: 2   LNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDA 61
           +N+YP+WKY +IV+VL+VG IY+ PN + + PAVQ+S A + ++V+ +   RV +AL  A
Sbjct: 1   MNRYPVWKYTIIVIVLLVGLIYALPNFFGEAPAVQVSAAKTVVKVDASTQTRVEEALKAA 60

Query: 62  KIAVKGASLGEKGSGL-IRLTNQEDQLPAKDVVRKALGDD-----YVVALNLAQTTPQWL 115
            +     +L   G+ L  R    +DQL A+D V++AL  D     Y VALNL   +P+WL
Sbjct: 61  GLTPDLITLD--GTSLRARFATTDDQLKARDAVQRALVPDANDPPYTVALNLVSRSPKWL 118

Query: 116 RNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDG 175
             L A PM LGLDL GGV FLL+VDM  A+  + + +  +++T  R + +R  ++ +   
Sbjct: 119 TALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKNIRGTAVSRNGQ 178

Query: 176 GIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRL--ALTQAKVAEIREYSIKQ 233
            + + F D A+ + A+ LI+  F D  L+TTD  + +  RL  ++       +++ ++KQ
Sbjct: 179 TVEVSFRDAASLDAAKRLIQDQFQD--LSTTDSQDGSNWRLVASIKPEAARRLQDAALKQ 236

Query: 234 NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGA 293
           N+TT+ NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA+AK ILG+TA LE R   E   
Sbjct: 237 NITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATLEMRMVDESAE 296

Query: 294 SKAT----------TEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHG-RPQVNIRL 342
            +A           +E F  R+G R   V++ +++TG+ +TDAQ  FD+   +P+V++ +
Sbjct: 297 GRAAELGGGPVPFGSEKFLDRQG-RPVIVKKQVLVTGENLTDAQPGFDQQSNQPKVDLTM 355

Query: 343 DGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLA 402
           D  GG +M   +R N  + MA++  E+                         + ++++  
Sbjct: 356 DAKGGRIMRDVSRENYKKRMAMLIFEKG------------------------KGEVLTAP 391

Query: 403 TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDA 462
           +I   LG++F+++G     E+++LALLLRAG LAAPM   +ERTIGP+LGADNI KG  +
Sbjct: 392 SINGELGNRFQVSGSMTVVEANDLALLLRAGSLAAPMEIIQERTIGPTLGADNIEKGFKS 451

Query: 463 SLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMA 522
            ++G L + +F+ A Y  FG+ ++IALA N++LL+A++S+L ATLTLPGIA + L +G+A
Sbjct: 452 VMYGFLAIMVFMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVA 511

Query: 523 VDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKG 582
           +D+NVLI  R+REE+  G S Q AIH G+ RA+  I+D+N+TTL+ G  L A G+GPV+G
Sbjct: 512 IDSNVLINERVREELRNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRG 571

Query: 583 FAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKL 618
           FAV   +GI TSMF+AV  +R LVN   G +  KKL
Sbjct: 572 FAVVHCIGIVTSMFSAVFFSRGLVNFWYGQK--KKL 605