Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 522 a.a., protein translocase subunit SecD from Magnetospirillum magneticum AMB-1

 Score =  333 bits (854), Expect = 1e-95
 Identities = 205/524 (39%), Positives = 291/524 (55%), Gaps = 50/524 (9%)

Query: 108 AQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRY 167
           A   P WL+     P+ LGLDL GG + LLEVD       ++      V+T LRKE+++Y
Sbjct: 33  ADRMPHWLQ-----PVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTLRKEKIKY 87

Query: 168 RSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIR 227
             L  +   + +   +   R +AR  +RK   +  + T D   +    L  ++  V   +
Sbjct: 88  SDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMV---LKYSEQAVKARK 144

Query: 228 EYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRF 287
             +I+Q+L  VR R++ELG  EP +QRQG +RIVV+LPGV+D    K +LGKTA L F  
Sbjct: 145 TAAIEQSLEIVRRRIDELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHL 204

Query: 288 ------------GAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGR 335
                       G  P  S       + R    S  V + + + GD + D++A++ E GR
Sbjct: 205 LDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYVVRKRIEVGGDMLVDSKATYSE-GR 263

Query: 336 PQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEE 395
           P V+ R    G +    ATR N G+ +A++                             +
Sbjct: 264 PVVSFRFSAAGAKKFGDATRENAGKFLAIVL----------------------------D 295

Query: 396 KKIISLATIQSP-LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454
           +K+IS   I  P LG    I+G     ++ +L+LLLRAG L AP+   EERT+GP LGAD
Sbjct: 296 EKVISAPRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGAD 355

Query: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514
           +I  G  ASL G+  V + +I +Y + G LA +A+  N++LLLA +S LGATLTLPGIAG
Sbjct: 356 SIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSALGATLTLPGIAG 415

Query: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574
           IVLTMGMAVDANVLI+ R+REE   G S+  AI  G++RA+  I DA++TTL+   +LF 
Sbjct: 416 IVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQ 475

Query: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKL 618
            G+GPV+GFAVT++LG+  S+FTAV+V R +V      R +K L
Sbjct: 476 FGSGPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTL 519



 Score = 38.9 bits (89), Expect = 6e-07
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 22/116 (18%)

Query: 2   LNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQI--------------SGASSALQVN 47
           +N +P WK AL+ +V + G +++ PNL   D A ++               G+   L+V+
Sbjct: 1   MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVD 60

Query: 48  QADLDRVS-KALVDA------KIAVKGASLGEKGSGL-IRLTNQEDQLPAKDVVRK 95
            A + R    +LV+       K  +K + LG +G  + +R+   +++  A++ +RK
Sbjct: 61  TAYVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRK 116