Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 604 a.a., Protein translocase subunit SecD from Escherichia coli ECRC62

 Score =  534 bits (1376), Expect = e-156
 Identities = 292/617 (47%), Positives = 424/617 (68%), Gaps = 25/617 (4%)

Query: 12  LIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDAKIAVKGASLG 71
           ++++V+V+G +Y+ PNL+ +DPAVQI+GA       Q  L +V K L + KI  K  +L 
Sbjct: 1   MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQT-LIQVQKTLQEEKITAKSVAL- 58

Query: 72  EKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGASPMKLGLDLSG 131
           E+G+ L R  + + QL A++ +   +GD YVVALNLA  TP+WL  + A PMKLGLDL G
Sbjct: 59  EEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRG 118

Query: 132 GVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDG-GIMLGFADDATREQA 190
           GVHFL+EVDMD A+    +     +++ LR++ + Y ++ +++  G+ + F D   R++A
Sbjct: 119 GVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEA 178

Query: 191 RALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVRNRVNELGVAEP 250
            A + K   D  +++   N+L   R  ++ A+++E REY+++QN+  +RNRVN+LGVAEP
Sbjct: 179 IAYLSKRHPDLVISSQGSNQL---RAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEP 235

Query: 251 LVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRF--------GAEPGASKATTEVFE 302
           +VQRQGA+RIVVELPG+QDTA AK ILG TA LEFR          A  G     +EV +
Sbjct: 236 VVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQ 295

Query: 303 FREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNVGRSM 362
            REG +   + + +I+TGD +TD+ +S DE+ +PQVNI LD  GG +MS  T+ N+G+ M
Sbjct: 296 TREG-QPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPM 354

Query: 363 AVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGE 422
           A +F+E K   +  K A G           V+++++I++A IQS LG+ FRITG+N   E
Sbjct: 355 ATLFVEYKDSGK--KDANGRAV-------LVKQEEVINIANIQSRLGNSFRITGINNPNE 405

Query: 423 SSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRAFG 482
           + +L+LLLRAG L AP+   EERTIGP+LG  NI +G++A L G+L   LF+I  Y+ FG
Sbjct: 406 ARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFG 465

Query: 483 VLATIALAGNMVLLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGM 541
           ++AT AL  N++L++ +MSLL GATL++PGIAGIVLT+ +AVDANVLI  RI+EE++ G 
Sbjct: 466 LIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGR 525

Query: 542 SVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMV 601
           +VQ+AI EG+  A+S+I DAN+TTL+   IL+A+GTG +KGFA+T  +G+ TSMFTA++ 
Sbjct: 526 TVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVG 585

Query: 602 TRALVNLTCGGRDIKKL 618
           TRA+VNL  GG+ +KKL
Sbjct: 586 TRAIVNLLYGGKRVKKL 602