Pairwise Alignments

Query, 518 a.a., DNA-binding transcriptional dual regulator (NO) from Pseudomonas putida KT2440

Subject, 469 a.a., fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  247 bits (631), Expect = 6e-70
 Identities = 143/337 (42%), Positives = 204/337 (60%), Gaps = 4/337 (1%)

Query: 185 QASGQDRELIGQSPAHKRLVEEIRLVGSSDLTVLITGETGVGKELVAQALHRASSRADKP 244
           Q +G   ++IG++PA + +   I  +  S ++VLI GE+G GKELVA ALHR S RA  P
Sbjct: 132 QLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAP 191

Query: 245 LVSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGELPLTVQAK 304
            ++LN AA+P  L+ESELFGH +GAFTGA+  R+G+FE A+GGTLFLDE+G++PL VQ +
Sbjct: 192 FIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTR 251

Query: 305 LLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVRTGNFRADFYHRLSVYPLHVPPL 364
           LLRVL  GQ  R+G     +VDVR+IAAT+++L   V+ G FR D +HRL+V  +H+PPL
Sbjct: 252 LLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPL 311

Query: 365 RERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALIAYDWPGNVRELEHLIGRSALKA 424
           RER  D+  LA +FL+     LG+ +  L  E +AAL    WPGNVR+LE+      + A
Sbjct: 312 RERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371

Query: 425 LGQH---PDRP-RILTLEAIDLDLRVSATTPGTLPSPAAPLQVVTPPEGGLREAVDSYQR 480
            GQ     D P  +      +   ++   +  TL +  A   + +  +  L EA    +R
Sbjct: 372 AGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELER 431

Query: 481 QVIEACLQRHQDNWAAAARELGLDRANLSRLARRLGL 517
            ++   L+  Q +   AAR LG  R  L+R  + LG+
Sbjct: 432 TLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468



 Score = 25.0 bits (53), Expect = 0.006
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 418 GRSALKALGQ-HPDRPRILTLEAIDLDLRVSATTPGT---LPSPAAPLQVVTPPEGGLRE 473
           G + LK + Q HP  P I+     DLD  VSA   G    LP P    + V   E     
Sbjct: 62  GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE----R 117

Query: 474 AVDSYQRQ 481
           A+  YQ Q
Sbjct: 118 AISHYQEQ 125