Pairwise Alignments

Query, 518 a.a., DNA-binding transcriptional dual regulator (NO) from Pseudomonas putida KT2440

Subject, 670 a.a., DNA-binding transcriptional activator HyfR from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  254 bits (650), Expect = 5e-72
 Identities = 163/404 (40%), Positives = 227/404 (56%), Gaps = 16/404 (3%)

Query: 120 PLMVDERPWGLVTLDALTPGQFQSLELDALQAFASLAAATVTVAER---IEHLALRAEDE 176
           PL       G + L   +   F       LQ  A   A  V  A+    +  L    + E
Sbjct: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330

Query: 177 HHRAELYRQASGQDRELIGQSPAHKRLVEEIRLVGSSDLTVLITGETGVGKELVAQALHR 236
           +H+      ++    ++I QS A + L++++ +V  SD TVLI GETG GKE++A+A+H+
Sbjct: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQLDIVAKSDSTVLICGETGTGKEVIARAIHQ 390

Query: 237 ASSRADKPLVSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGE 296
            S R DKPLV +NCAA+P +L+ESELFGH +GAFTGA    RG+FE+A+GGTLFLDE+G+
Sbjct: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450

Query: 297 LPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVRTGNFRADFYHRLSV 356
           LPL +Q KLLRVLQ  +++RLG  R   V+VR+IAATNRDL   V    FR+D ++RL+V
Sbjct: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510

Query: 357 YPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALIAYDWPGNVRELEHL 416
           +PL +PPLR+R  D+ LLA +F ++    +      +  EA   L+++DWPGNVRELE++
Sbjct: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570

Query: 417 IGRSALKALGQHPDRPRILTLEAIDLDLRVSATTPGTLPSPAAPLQVVTPPEGGLREAVD 476
           I R+ L   G   +    L L      L  +      L S  A L   T PE       D
Sbjct: 571 IERAVLLTRGNSLN----LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN------D 620

Query: 477 SYQRQVIEACLQRHQDNWA---AAARELGLDRANLSRLARRLGL 517
             +RQ I   L+      A    AA  LG+ R  L    +RLG+
Sbjct: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664