Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 494 a.a., RTX toxin transporter, determinant D from Variovorax sp. SCN45

 Score =  130 bits (328), Expect = 6e-35
 Identities = 113/421 (26%), Positives = 197/421 (46%), Gaps = 60/421 (14%)

Query: 28  LCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEGDLVERGQ 87
           L AL L A L W+ + ++  V+   GK+I S R ++IQ  E  +V ++ V +GD VE GQ
Sbjct: 80  LIALFLIA-LTWSIFGQIDIVAVAPGKIIVSERTKIIQPLEVSVVKRVLVRDGDHVEAGQ 138

Query: 88  VLAQLDPTKT---ASSVGES----EAKYRAARASQARLQAEVTGKPLTFPESLRDSPDLI 140
            L +LDPT      +S+ E     +++    RA Q  L A    +     +++  S   +
Sbjct: 139 PLVELDPTTANADKTSIDEQLKSVQSEVLRTRALQQALNATTASRAPELGKNIPGSWSEV 198

Query: 141 DAETALYQ-------------------TRRRG----LEQTLAGIQDSLQLVRSELKITEN 177
           D + A  Q                    RR+     + + +A ++ ++ + R        
Sbjct: 199 DIDAARAQLSDEWSDITAKLAKASAEINRRQAEIATVREMVAKLETTVPIARQREADFHQ 258

Query: 178 LAKMGASS----------RVEVIR-LNRQRSEL-----ELKANE-------ARSDYLVRA 214
           LA  G  S          R+E+ R L  QR+ L      L+ +E       A + + +R 
Sbjct: 259 LANQGFMSSHANQDRTRERIELERDLATQRARLAEANATLRESENTRAAYIAETKHSLRT 318

Query: 215 REELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIV 274
           RE  A+   +         G+ + LT  TL++PV G V+ +  +T GGVV     +M IV
Sbjct: 319 REAAAELKRQQGTQDLAKAGQRERLT--TLKAPVAGTVQQLAAHTEGGVVTEAQPLMVIV 376

Query: 275 PMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPE 334
           P   ++  E  +  +DI F+ P Q A +K+  + Y+ YG ++  V  ++ D + DE +  
Sbjct: 377 PDGAQVTAEVTLDNKDIGFVSPMQEAAIKLETFPYTRYGTVNATVKTVTADAVNDEKRGA 436

Query: 335 IYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPLNRAK-EALRE 393
           I+   + +    D+  +   K   + PGM  T +I+TG++ ++++L+ P+ RA  E++RE
Sbjct: 437 IFPVTLNL---NDTTIDVDEKPIKLSPGMNLTAEIKTGKRRVIEFLLSPVQRASGESMRE 493

Query: 394 R 394
           R
Sbjct: 494 R 494