Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 282 a.a., HlyD family efflux transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  119 bits (298), Expect = 1e-31
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 6/167 (3%)

Query: 229 SEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLLIETRIAP 288
           S+    ++D L+ +   SPVRGI++ I V+   G + PG  +++I P+D++LLIE R+  
Sbjct: 121 SDAGENKADKLSLVV--SPVRGIIRYILVDAATGQISPGRTLVEITPLDDKLLIEARVRL 178

Query: 289 RDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDS 348
           +D+AF+ P Q A +  +AYD   +GGL G +  IS D   D+     Y  R  +RTE++ 
Sbjct: 179 QDMAFLRPGQEAMMTFTAYDDITFGGLKGYIDQISQDMATDQAGNSFYLVR--LRTEKNY 236

Query: 349 LQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPLNRAK-EALRER 394
           L N   K   I+PGM A V+I TG KT+L YL+KP+ +A+ EALRER
Sbjct: 237 LGN-IDKPLLILPGMAAHVNIITGRKTLLSYLLKPIRQARAEALRER 282



 Score = 46.6 bits (109), Expect = 9e-10
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 2   SNHELPASYLDGQDDQAVFRAGRIITLCALMLAAF----LAWAAWFEVTEVSTGTGKVIP 57
           S+H+     L       V    RII L   ++ AF    + WA+  E+ EV   TGK + 
Sbjct: 16  SHHQQDPQALSDVGQALVEDTPRIIRLSIWIMLAFAVFLVGWASVAEIDEVVQATGKTLS 75

Query: 58  SSREQVIQSFEGGIVAQMSVAEGDLVERGQVLAQLD---PTKT-ASSVGESEA 106
            S+   +Q+ E G ++ + + EG +V  G  L +L+   P+ T  S  GE++A
Sbjct: 76  QSQRYRVQAQEAGELSDIYIREGQIVNIGDPLMRLEHVQPSSTNTSDAGENKA 128