Pairwise Alignments

Query, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  158 bits (400), Expect = 3e-43
 Identities = 115/421 (27%), Positives = 194/421 (46%), Gaps = 53/421 (12%)

Query: 13  GQDDQAVFRAGRIITLCAL-MLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGI 71
           G  + ++ R    + +  L +L     WAA+ ++      TG+V+     + IQ   GGI
Sbjct: 8   GTTNSSILRHSAAVVVLGLGLLVGMGGWAAFAKLAGAVVATGRVVVEGNSKKIQHLSGGI 67

Query: 72  VAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTGKP----- 126
           V++++V EGD V  GQ+L +L  T   +++   E       + +ARL+AE+  +P     
Sbjct: 68  VSEINVVEGDRVAAGQILLRLSATVVQANLSIIENTLAQLYSRRARLRAEIAEEPSFTVT 127

Query: 127 --LTFPESLRDSPDLIDAETALYQTRR---------------------RGLEQTLAGIQD 163
             LT   S + +   ID+E  L+ +RR                     RGL+  +   ++
Sbjct: 128 EDLTALTSSKSAKTFIDSEQNLFNSRRNALIGMKKQLATRKLQLADEARGLDVQVEATEN 187

Query: 164 SLQLVRSELKITENLAKMGASSRVEVIRLNRQRS---------------------ELELK 202
            L +V+ ++  T+ L K G  +   +  L RQ S                     EL+L+
Sbjct: 188 ELAIVKEDVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVGKLSELDLQ 247

Query: 203 ANEARSDYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGG 262
             +   D      ++L    A      E +    D L RL +RSP+ G +  + V+ + G
Sbjct: 248 LLQLDEDRKSEVTKDLTSIEATVAEYEERLAATRDQLDRLDIRSPIAGRIYQLSVHNING 307

Query: 263 VVQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGI 322
           V+QPG  +M +VP  + L IE  I PRDI  I+  Q   V+ +A++ S    L  +V  +
Sbjct: 308 VIQPGEVLMLVVPDKDDLAIEANITPRDIDQIYVGQPVTVRFTAFNQSTTPDLSAEVAVV 367

Query: 323 SPDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIK 382
           +PD LQ + +    YY + IR  +  + +  G +  + PGM A V I+T E+++L Y +K
Sbjct: 368 APD-LQTDSRTGTSYYVLRIRPNKAGMGHLPGGK--LYPGMPAEVFIQTSERSVLSYFVK 424

Query: 383 P 383
           P
Sbjct: 425 P 425