Pairwise Alignments

Query, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 416 a.a., porin from Pseudomonas simiae WCS417

 Score =  201 bits (511), Expect = 4e-56
 Identities = 135/440 (30%), Positives = 219/440 (49%), Gaps = 31/440 (7%)

Query: 7   FTPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRD--NHNAGVRDTREWGQ 64
           F P  + L   +   A     +  GF+E +S NL+ RN +FNR+  N        +EW Q
Sbjct: 4   FHPRRLLLATAVASLALPVVAEEHGFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQ 63

Query: 65  GAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAPHSFST 124
             +   +SG+T G VGFG+D   +  LKLDGG G  GT +LP  +  DG        F  
Sbjct: 64  SFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLP--LDHDGR---PADEFGR 118

Query: 125 AGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSF 184
            G A K +   TE+K G+     P++   + R LPQT RG  +T+  IDGL L GGQ   
Sbjct: 119 LGVAFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRA 178

Query: 185 THPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITA-NLYAAELKDIWNQYYA 243
             P + S    +  +  +    D+    N+ GA ++  +  T   L+ A+LKDI++Q + 
Sbjct: 179 NSPRDDSSMNDLSMFGKTAFTSDR---FNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFI 235

Query: 244 DFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQRVN 303
           +  ++  + +  +L   + F++ +D G A  G++DN T+S  F+   G ++     Q++ 
Sbjct: 236 NLIHSQPLGNW-TLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKYGGNTFYLGLQKLT 294

Query: 304 GNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSRGEA 363
           GN+ +  +N      L N    + ++   E+SW++++ Y+FA +GVPGL+    Y  G  
Sbjct: 295 GNSAWMRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSN 354

Query: 364 DLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRGSQGYAS 423
             T              DGK    W R+ ++ Y  Q G LK+L+V +R ++ R       
Sbjct: 355 VHTGTV----------TDGK---EWGRESELGYTVQSGSLKNLTVRLRNSSMRRDY---- 397

Query: 424 IDSNSDNDELRVIVDYPLNV 443
             SN++ DE R+IV YP+++
Sbjct: 398 --SNNEFDENRLIVSYPISL 415