Pairwise Alignments

Query, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  310 bits (795), Expect = 5e-89
 Identities = 179/453 (39%), Positives = 267/453 (58%), Gaps = 31/453 (6%)

Query: 8   TPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRD--------NHNAGVRDT 59
           T L +A+    P  A +D++   GFI+G+  ++  RN +F++D        N N G R +
Sbjct: 9   TALSLAILLASPAFADSDDE---GFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQS 65

Query: 60  --REWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSI-LPEHIKDDGEL- 115
             REWG G +A  +SG+T G VGFG+D   ++GLKLDGG G  G  + +P  +   G   
Sbjct: 66  LHREWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNF 125

Query: 116 -GAAPHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDG 174
            G    S+   G A+K++AFDTEL+ GD+  T+PV+   + R+LPQT RG    N S+DG
Sbjct: 126 DGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDG 185

Query: 175 LLLEGGQVSFTHPYNQSGHRR-IDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAE 233
           L L+GG++  +   N S HR  + T Y    +   +  + + G  +   + +T  L+++ 
Sbjct: 186 LSLQGGKLESSSDRNASNHRGDLGTVYAGRIKG--ANDVVYLGGDYRFNDQLTLRLHSSR 243

Query: 234 LKDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFH 293
           L D+WNQ +   D+   +   +SL  G+++Y T+D+GQAL G+IDN+++SVH  + AG H
Sbjct: 244 LDDVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAH 303

Query: 294 SVTAAYQRVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLS 353
               +Y R++G+TPFDY+     + LD +   SDFN PNER+W+ +Y YDFA +GVPGLS
Sbjct: 304 GFKLSYTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLS 363

Query: 354 TSLSYSRG-EADLTKATQDTTHYDYYR--EDGKNAMHWERDLDVKYVFQEGDLKDLSVLV 410
            +  Y RG + D T+A      Y Y+   EDG+   HWER+L +KYV Q G  KDLS  +
Sbjct: 364 LTARYVRGTDIDGTRA---GGAYSYFNGTEDGR---HWERNLWLKYVLQSGPAKDLSFNL 417

Query: 411 RYATHRGSQGYASIDSNSDNDELRVIVDYPLNV 443
             ATHR    +    + S+ DELR+IV YPL++
Sbjct: 418 MQATHRVGGDHV---AESNVDELRLIVQYPLDI 447