Pairwise Alignments

Query, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  263 bits (672), Expect = 8e-75
 Identities = 164/447 (36%), Positives = 242/447 (54%), Gaps = 40/447 (8%)

Query: 6   RFTPLFIALTA-TIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRD--NHNAGVRDTREW 62
           +++ + +A++A T   A  + +D++ GFIE S  ++  R  YF+RD  N+  G     E 
Sbjct: 5   KWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREET 64

Query: 63  GQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAPHSF 122
           G G V  FESG+T G VG G+DA  MLGLKLD G G AGT + P      G  G +   +
Sbjct: 65  GLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFP-----TGSDGRSQDDY 119

Query: 123 STAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQV 182
           S  G AVK +  DT LK GD F   PV A  ++R+LP+  +G  +T+  I+GL L  G  
Sbjct: 120 SKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHF 179

Query: 183 SFTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQYY 242
           +      Q+     D++          K  N  G +++ T++++ +LY ++++D W +YY
Sbjct: 180 TSLTAQEQTNR---DSF--------GLKEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYY 228

Query: 243 ADFDYTYVVNDLVSLNPGVHFYHTQDTGQALL-----GKIDNNTYSVHFTVNAGFHSVTA 297
           A+ ++   ++D   L    + Y T+  G A        K+DN  +S+    N G H+ T 
Sbjct: 229 ANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTL 288

Query: 298 AYQRVNGNTPFDY-INLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSL 356
           AYQ+V G+  + Y I+ G +++L NS   SDFNA +E+SW+ +Y  +FA  G+PGL+   
Sbjct: 289 AYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMT 348

Query: 357 SYSRGEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHR 416
            Y RG       T              N   WERD+D+KYV QEG  KDLS  VR AT+R
Sbjct: 349 RYVRGSDANVAGT-------------SNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYR 395

Query: 417 GSQGYASIDSNSDNDELRVIVDYPLNV 443
            S G    DS S  DELR+IV+YPL++
Sbjct: 396 SSDG-VYYDSPS-IDELRLIVEYPLSI 420