Pairwise Alignments

Query, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 412 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  198 bits (503), Expect = 3e-55
 Identities = 136/418 (32%), Positives = 200/418 (47%), Gaps = 35/418 (8%)

Query: 29  ADGFIEGSSFNLHFRNAYFNRDNHNAGVRDTR--EWGQGAVARFESGYTPGVVGFGLDAH 86
           A GF+E     L  RN Y NR+  N     ++  EW Q  +    SG+T G +GFG+D  
Sbjct: 26  AAGFVEDGKATLGLRNFYINRNFTNPSNPQSKAEEWTQSFILDARSGFTEGPIGFGVDVL 85

Query: 87  AMLGLKLDGGGGHAGTSILPEHIKDDGELGAAPHSFSTAGAAVKLKAFDTELKAGDLFLT 146
            +  +KLDGGGG  GT++LP H  DDG        +     A K +   TELK G+    
Sbjct: 86  GLWSVKLDGGGGTYGTALLPRH--DDGR---PADDYGRLAVAGKARISKTELKIGEWMPV 140

Query: 147 NPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTHPYNQSGHRRIDTYYGSLDEH 206
            P++   + R LPQTFRG  +T+  I GL L GGQ     P N +     D  YG     
Sbjct: 141 LPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRNDASME--DMSYGG---- 194

Query: 207 DKSKHLNWAGASWSGTEHIT-ANLYAAELKDIWNQYYADFDYTYVVNDLVSLNPGVHFYH 265
             S   N+ G  +   +  T   L+ A LKD++ Q Y    ++  V D  +L   + ++H
Sbjct: 195 GVSDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQLSHSQPVGDW-TLGANLGYFH 253

Query: 266 TQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQRVNGNTPFDYINLGDSVYLDNSRMY 325
             + G    G++DN TYS  F+   G  +     Q+V+G+T +  +N      L N    
Sbjct: 254 GDEDGSERAGQLDNKTYSGMFSAKYGGSTFWVGLQKVDGDT-WMRVNGTSGGTLANDSYN 312

Query: 326 SDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSRGEADLTKATQDTTHYDYYREDGKNA 385
           S F+  NERSW++++ ++F  VGVPGL+    Y  G              D +     + 
Sbjct: 313 SSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISGR-------------DVHSGGVTDG 359

Query: 386 MHWERDLDVKYVFQEGDLKDLSVLVRYATHRGSQGYASIDSNSDNDELRVIVDYPLNV 443
             W R+ ++ YV Q G  KDLSV  R ++ R         SN++ DE R+I +YPL++
Sbjct: 360 KEWVRETELAYVIQSGAFKDLSVKWRNSSIRRDY------SNNEFDENRLIFNYPLSL 411