Pairwise Alignments

Query, 496 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 472 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  164 bits (416), Expect = 5e-45
 Identities = 120/409 (29%), Positives = 187/409 (45%), Gaps = 35/409 (8%)

Query: 115 LDKQGNIVGDSTSSVPRKANFGETGVFKAHQHNANLGLLVGPPFKAKLGDLDWCISFSRR 174
           + + G +   +   +  + +  +   F+ H       L +  P   ++    W I F+R+
Sbjct: 57  IGRDGRLSFSNLQRMTDRVDLSDREHFRVHLEQEGDFLFISKPLLGRISQ-KWSIQFTRK 115

Query: 175 ISGPNGEFAGLAAGALRLSYFNELFQRLDIGHDSSINLFNTDGQLLVRQPYRGQDPL-IG 233
           I    GEF G+   ++   +     + + +G    I L + D  +L R   R  D   +G
Sbjct: 116 IFNDRGEFDGVIVLSIDPYFLGRFAETVSLGDKDVIALLHQDRTVLSRALGRNYDERHLG 175

Query: 234 TYYTERPNFKRILSEQSGSFTARSHSSGKLRMFTFARVAQLPLIVLVAHSADEVFESWRR 293
                RP +   L+  SG F   S   G  R+  + ++ Q  L V+     +E F     
Sbjct: 176 KVIEPRP-YTEPLAPDSGVFDGASPIDGIQRIVGYQKLRQYGLFVVAMVDREEAFARSSH 234

Query: 294 TAIL---------VSVATGGLCVGILWLTLL--------LGRELRRRHE----------- 325
            A+L         V +    L  G+   T+         +  EL+  HE           
Sbjct: 235 AALLGYLIGVVGTVLLTLASLASGLAIWTIFREYATVQTMNAELKAAHEDLEATHQALKR 294

Query: 326 AEEDLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRKPLAILMVDVDHFKAFNQRHGH 385
            E +L +LA TD L  + NRRR   V   E  R +R R+  +I+++D+DHFKA N  HGH
Sbjct: 295 REMELVLLAETDPLCRIPNRRRFMSVADAELVRHRRYRRKFSIIILDIDHFKAVNDNHGH 354

Query: 386 AGGDHALREVAKAIEACIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRANVEALA 445
             GD  L  +A+ I+  +R  +D  AR GGEEF +VLPETD  GA ++AE +R  V    
Sbjct: 355 TAGDAVLVGIAQVIQNRLRE-SDTFARIGGEEFAIVLPETDGKGAMVVAENLRQAVSGAR 413

Query: 446 PFADDAHAVTVSIGIGLSGTQQD---LGRLLGAADEALYRAKANGRNRV 491
              D   +VT++I IG++   +D   +  +L  AD+ALY AK +GRNRV
Sbjct: 414 IDLDGDRSVTITISIGIASLDEDHTTVSDILSRADKALYSAKDSGRNRV 462