Pairwise Alignments

Query, 560 a.a., Medium-chain-fatty-acid CoA ligase from Pseudomonas putida KT2440

Subject, 558 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

 Score =  363 bits (931), Expect = e-104
 Identities = 211/537 (39%), Positives = 303/537 (56%), Gaps = 28/537 (5%)

Query: 23  LLMSGSRYEKTREIVYRDQM----RLTYPQLNERIARLANVLTEAGVKAGDTVAVMDWDS 78
           L+   +R    +EIVYR       R TY     R+ R AN L   GV+ GD V ++DW+S
Sbjct: 29  LIRHAARTHGDQEIVYRTPDGGWDRYTYADCYARVCRSANALRALGVEPGDRVGILDWNS 88

Query: 79  HRYLECMFAIPMIGAVVHTINVRLSPEQILYTMNHAEDRVVLVNSDFVGLYQAIAGQLTT 138
            R+ E  ++IP +GAV+  +N+RL PE + Y ++H++   V V+   + L +++A     
Sbjct: 89  RRHFELYWSIPGLGAVMLQMNLRLGPEDLGYVVDHSKVSYVCVDESLLPLAESVAANSPQ 148

Query: 139 VDKTLLLTDGP---DKTAELPGLVGEYEQLLAAASPRYDFPDFDENSVATTFYTTGTTGN 195
           +   +++TD P    KT   P L   YE LLAAA  + D+P+ DE S  +  YTTGTTG 
Sbjct: 149 IKGWIVMTDKPLDQIKTTLKPLL--HYEDLLAAADTKIDWPEIDETSAYSACYTTGTTGK 206

Query: 196 PKGVYFSHRQLVLHTLAEASVTGSIDSVRLLGSNDVYMPITPMFHVHAWGIPYAATMLGM 255
           PKGVY+SHR + LH+ A A+  G       +  +D  M ITPMFH   WG+P AAT+L  
Sbjct: 207 PKGVYYSHRGIYLHSTAMATNLG-------MTLDDCVMLITPMFHGQCWGLPQAATLLAD 259

Query: 256 KQVYPGRY---EPDMLVKLWREEKVTFSHCVPTILQMLLNCPNAQG--QDFGGWKIIIGG 310
           K V PGRY   +   LV     E VT ++  P I Q +L          DF   +++ G 
Sbjct: 260 KIVLPGRYVAEDTKPLVDAMIAEGVTIANGAPAIFQPMLQYIETMPVKPDFSRMRMLSGA 319

Query: 311 SSLNRSLYQAAL-ARGIQLTAAYGMSETCPLISAAHLNDELQAG-SEDERVTYRIKAGVP 368
           +    S+        G ++  AYG +E   L++   L   L+   +E+E+   + K G+ 
Sbjct: 320 TEPPLSMMIGFYDLTGAEVVHAYGATEATTLVTMNRLKSTLKKRLTEEEKWNLKRKQGLV 379

Query: 369 VPLVEAAIVDGEGNFLPADGETQGELVLRAPWLTMGYFKEPEKSEELWQGGWLHTGDVAT 428
           +  V+  I+D +   LP DG++ GE+ LR PW+T  Y   P+ ++   +GGW  +GDV T
Sbjct: 380 LTGVDIRILDADDKDLPHDGKSAGEICLRGPWITARYHDMPDSADRFLEGGWWRSGDVGT 439

Query: 429 LDGMGYIDIRDRIKDVIKTGGEWVSSLDLEDLISRHPAVREVAVVGVADPQWGERPFALL 488
           +D  GY+ + DRIKDVIK+GGEW+SS+D+E+L+  HPAVR+ AVVG+   +W ERP AL+
Sbjct: 440 VDENGYLKVTDRIKDVIKSGGEWISSIDMENLLMGHPAVRDAAVVGIPHAKWQERPLALV 499

Query: 489 VARDGHDIDAKALKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRIRQD 545
           V R G     + L+EHL          KW +P Q+  V  IPKTSVGKLDKKRIR +
Sbjct: 500 VLRPGQQATQEQLQEHL-----TSAFAKWQLPDQVLFVEAIPKTSVGKLDKKRIRAE 551