Pairwise Alignments

Query, 560 a.a., Medium-chain-fatty-acid CoA ligase from Pseudomonas putida KT2440

Subject, 547 a.a., 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type from Variovorax sp. SCN45

 Score =  348 bits (892), Expect = e-100
 Identities = 209/541 (38%), Positives = 305/541 (56%), Gaps = 25/541 (4%)

Query: 17  PLLIKRLLMSGSRYEKTREIVYR----DQMRLTYPQLNERIARLANVLTEAGVKAGDTVA 72
           PLLI  L+    R+    EIV R    D  R T+  +  R  ++AN L    +   D VA
Sbjct: 9   PLLISSLIEFAERHNGDGEIVSRRVEGDIHRTTWGGIASRARQVANALDGEQLLFSDRVA 68

Query: 73  VMDWDSHRYLECMFAIPMIGAVVHTINVRLSPEQILYTMNHAEDRVVLVNSDFVGLYQAI 132
            + W+ +R+LE  + +   G V+HTIN RL P+QI +  NHAED+++  +  F+ L QA+
Sbjct: 69  TLAWNGYRHLELYYGVSGSGRVLHTINPRLHPDQIAWIANHAEDQILCFDLSFLPLVQAV 128

Query: 133 AGQLTTVDKTLLLTDGPDKTAE--LPGLVGEYEQLLAAASPRYDFPDFDENSVATTFYTT 190
             +   + K + L D     A+  +P LV  YE  L   S  YD+P FDENS ++  YT+
Sbjct: 129 HARCPMIRKWVALCDADKLPADSGVPNLVS-YETWLGQQSTDYDWPTFDENSASSMCYTS 187

Query: 191 GTTGNPKGVYFSHRQLVLHTLAEASVTGSIDSVRLLGSNDVYMPITPMFHVHAWGIPYAA 250
           GTTGNPK   +SHR  +LH  A A     +  V  + + D  +P+ PMFHV+AWGIPY+A
Sbjct: 188 GTTGNPKAALYSHRSTMLHAYAAA-----LPDVMRISAQDSVLPVVPMFHVNAWGIPYSA 242

Query: 251 TMLGMKQVYPG-RYEPDMLVKLWREEKVTFSHCVPTILQMLLNCPNAQGQDFGGW-KIII 308
            ++G K V+PG   +   + +L   E VTF+  VPT+ QM+L      G  F    + +I
Sbjct: 243 ALVGCKLVFPGPSLDGKSVYELIESEGVTFAAGVPTVWQMMLGHMQTNGLKFSKLNRTVI 302

Query: 309 GGSSLNRSLYQAALAR-GIQLTAAYGMSETCPLISAAHLNDELQAGSEDERVTYRIKAGV 367
           GGS+   ++  A   +  +++  A+GM+E  PL +   L ++  +   D ++  R+K G 
Sbjct: 303 GGSACPPAMITAFQEKYNVEVLHAWGMTEMSPLGTLCTLKNKHLSLPADAQLQIRMKQGR 362

Query: 368 PVPLVEAAIVDGEGNFLPADGETQGELVLRAPWLTMGYFKEPEKSEELW---QG-GWLHT 423
            +  V+  IVDG+GN LP DG+  G+L+++ PW+   YFK  E  + L    QG GW  T
Sbjct: 363 AIFGVDMKIVDGDGNELPWDGKAYGDLLVKGPWVVKEYFKG-EGGDPLIADAQGRGWFPT 421

Query: 424 GDVATLDGMGYIDIRDRIKDVIKTGGEWVSSLDLEDLISRHPAVREVAVVGVADPQWGER 483
           GDVAT+D  GY+ I DR KDVIK+GGEW+SS+D+E++   HPAV   A +GV  P+W ER
Sbjct: 422 GDVATIDADGYLQITDRSKDVIKSGGEWISSIDIENIAVAHPAVAMAACIGVFHPKWDER 481

Query: 484 PFALLVARDGHDIDAKALKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRIR 543
           P   +V + G    A+  +E L  F E G   KW IP  +  V  IP  + GK+ K R+R
Sbjct: 482 PIIAVVKKPG----AEVTREELLKFYE-GKTAKWQIPDDVVFVEAIPLGATGKILKTRLR 536

Query: 544 Q 544
           +
Sbjct: 537 E 537