Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C from Pseudomonas putida KT2440

Subject, 338 a.a., ribosomal RNA small subunit methyltransferase from Agrobacterium fabrum C58

 Score = 80.5 bits (197), Expect = 6e-20
 Identities = 74/250 (29%), Positives = 112/250 (44%), Gaps = 17/250 (6%)

Query: 68  FDSAVLFLPKSR-ELAAYLLNALASRLAGRELYLVGEKRGGIEGAAKQLQAFGKPRKLDS 126
           +D+A+L   K R E    +  AL+   AG  +   G K  GI    K L   G   +   
Sbjct: 74  YDAALLLCGKHRGENENRVAEALSRVKAGGLIVAAGSKEDGIVTLRKTLSKLGIESESTP 133

Query: 127 ARH-CQLWQVTIDQAPQAKPLESLAERFELALEDGPLQ--VVSLPGVFSHGRLDRGTALL 183
             H   +W          +P +  A   +LA +   ++    +LPG+FSH R+D G+ LL
Sbjct: 134 KYHGVAIWF--------KRPEDVSAAVLKLAQKPATVEGRFTALPGMFSHDRVDDGSELL 185

Query: 184 LKHLDGLPGGHMLDFGCGAGVLGATLKRRYPQ-SRVTLLDVDAFAVAASRLTLAANG--L 240
              L     G+  DFG G G L   L  + P+ +R+ L + D  A+  ++  L  N   L
Sbjct: 186 ASRLPTDFDGNAADFGAGWGYLSIMLAEKSPRTARIDLFEADWNALEFAKTNLLENNPRL 245

Query: 241 EGEVISGDGIDAAPTE-LSLILSNPPFH-TGVHTNYQASENLLKKSAVHLRKGGEMRLVA 298
                  D  +  P E   LI+ NPPFH  G        +  +K +A  LR GG++ +VA
Sbjct: 246 TARFFWQDLANEPPKEKYDLIIMNPPFHAAGQAAEPALGQAFIKAAAGALRSGGKLLMVA 305

Query: 299 NSFLRYQPLI 308
           N  L Y+P++
Sbjct: 306 NRGLPYEPVL 315